PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 270aa MW: 30418.1 Da PI: 7.6356

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.006G060400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.2	3e-08	155	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L++++P + ++ + a +L + ++Y++sLq Gorai.006G060400.1 155 SHSLAERVRRGKINERLRCLQDIVPGC----HRTMGMAVMLDEIINYVQSLQ 202 8***********************9....889999***********99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-16	149	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.36E-8	149	206	No hit	No description
PROSITE profile	PS50888	14.996	151	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-15	151	213	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-5	155	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.1E-8	157	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MADFTSDFQS FKQSFSFLDM ESLNHFTELN PRLLDNSVMN YQSFLPSSID NFFSNQAQAI 60 PGHEGGNLQS TASVFQPLLS AKTELIHESM KRKALDVSKS SSFGNSLSSP QVSEAEVKRR 120 NDSGRGKRAK RNEKEEEKPK DVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQDIVPG 180 CHRTMGMAVM LDEIINYVQS LQNQIEFLSM KLTAASTYYD FNSEPDALER MQREKAQEAK 240 ELERLMREGY VGGLACFHSS SSSTWSSLT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	130	KRRNDSGRGKRAKR

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in stems. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of brassinosteroid signaling. {ECO:0000269\|PubMed:12454087}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by brassinosteroid, auxin and ethylene, and repressed by abscisic acid. Insensitive to gibberellic acid. {ECO:0000269\|PubMed:12454087}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012484285.1	0.0	PREDICTED: transcription factor BEE 1-like
Refseq	XP_016673479.1	0.0	PREDICTED: transcription factor BEE 1-like
Swissprot	Q8GWK7	9e-65	BEE3_ARATH; Transcription factor BEE 3
TrEMBL	A0A0D2NMG7	0.0	A0A0D2NMG7_GOSRA; Uncharacterized protein
TrEMBL	A0A1U8ICG7	0.0	A0A1U8ICG7_GOSHI; transcription factor BEE 1-like
STRING	Gorai.006G060400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2997	27	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18400.1	3e-61	BR enhanced expression 1

Link Out ? help Back to Top
Phytozome	Gorai.006G060400.1
Entrez Gene	105798673

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]