PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G058600.1
Common NameB456_006G058600, LOC105798658
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NF-X1
Protein Properties Length: 1080aa    MW: 116897 Da    PI: 8.1854
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G058600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X124.46.3e-08275293119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C+++CH G C+pC+
  Gorai.006G058600.1 275 CGRHQCERICHVGACDPCK 293
                         ******************8 PP
2zf-NF-X116.51.8e-05400414418
            zf-NF-X1   4 HkCqklCHeGpCppC 18 
                         H+C + CH G+CppC
  Gorai.006G058600.1 400 HRCDQVCHAGNCPPC 414
                         *************** PP
3zf-NF-X118.63.9e-06493511119
            zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                         CG+H+C++lCH G CppC 
  Gorai.006G058600.1 493 CGQHSCESLCHSGHCPPCL 511
                         ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.91E-696167No hitNo description
PROSITE profilePS500168.867104165IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590107162IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.288107163IPR001841Zinc finger, RING-type
CDDcd060083.64E-5196258No hitNo description
SMARTSM004380.023220238IPR000967Zinc finger, NF-X1-type
PfamPF014228222237IPR000967Zinc finger, NF-X1-type
CDDcd060081.59E-10265313No hitNo description
PfamPF014226.5E-6275293IPR000967Zinc finger, NF-X1-type
SMARTSM004386.1E-5275294IPR000967Zinc finger, NF-X1-type
CDDcd060081.71E-9329372No hitNo description
PfamPF014220.0016339356IPR000967Zinc finger, NF-X1-type
SMARTSM004386.8E-4339358IPR000967Zinc finger, NF-X1-type
CDDcd060085.61E-12387435No hitNo description
SMARTSM004380.0011397416IPR000967Zinc finger, NF-X1-type
PfamPF014226.1E-4399414IPR000967Zinc finger, NF-X1-type
PfamPF0142218455466IPR000967Zinc finger, NF-X1-type
SMARTSM00438180455489IPR000967Zinc finger, NF-X1-type
CDDcd060081.28E-8483526No hitNo description
PfamPF014229.6E-5493510IPR000967Zinc finger, NF-X1-type
SMARTSM004382.0E-4493512IPR000967Zinc finger, NF-X1-type
CDDcd060088.38E-6540588No hitNo description
PfamPF014223.5550567IPR000967Zinc finger, NF-X1-type
SMARTSM004380.036550568IPR000967Zinc finger, NF-X1-type
PfamPF014220.016603618IPR000967Zinc finger, NF-X1-type
SMARTSM004380.34603633IPR000967Zinc finger, NF-X1-type
CDDcd060083.74E-5631680No hitNo description
PfamPF0142212635661IPR000967Zinc finger, NF-X1-type
SMARTSM004380.081642663IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.7E-5880932IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1080 aa     Download sequence    Send to blast
MSFQGRNRSR NPSQSTRQEW VPRGSSSTTT TVESSSTAAS NSTPNVDQTS TRNDNKYRQT  60
GRPTNHRRDR EKGRSETQMA VRKEVDPNLP QLVQEIQDKL IKSTVECMIC YDMVPRSGAI  120
WSCSSCYSIF HLNCIKKWAR APTSVDLVAE KNQGFNWRCP GCQSVQFTSS KEIRYVCFCG  180
KRTDPPSDLY LTPHSCGEPC GKPLEKELGL GSRVMKDELC PHVCVLQCHP GPCPPCKAFA  240
PPRLCPCGKK VITTRCSDRK SVLTCGQWCG KLLECGRHQC ERICHVGACD PCKVLINAPC  300
FCKKKVEVVI CGDMVVKGKV KAEDGIFSCS STCGKKLRCG NHYCAENCHP GPCGDCELMP  360
SKIRSCYCGK TSLQEQRQSC LDPIPTCSET CAKFLPCQVH RCDQVCHAGN CPPCLVLVTQ  420
KCLCGSTSRR VECYKTTLEN ERFTCDKPCG RKKSCGRHRC SERCCPLSNS NSLRSGGWDP  480
HFCQMACGKK LRCGQHSCES LCHSGHCPPC LETIFTDLTC ACGRTSIPPP LPCGTPPPSC  540
QLPCSVPQPC GHSSSHSCHF GDCPPCSVPV AKECIGGHVV LRNIPCGSKD IRCNKLCGKT  600
RQCGLHACGR TCHPAPCDAS SGAEPGVRTS CGQTCGAPRR DCRHTCTAPC HPSAPCPDVR  660
CDFRVTITCS CGRLSATVPC DAGGCTGGFN ADTVFEASII QKLPVPLQPV ESTGKKIPLG  720
QRKLMCDDEC AKLERKRVLA DAFDITPPNL DALHFGENSV TSEVLFDLYR RDPKWVLAVE  780
ERCKFLVLGK NRGTTSGLKV HVFCPMLKDK RDAIRIIAER WKLTISAAGW EPKRFIVVHV  840
TAKSKPPARI IGAKGSTSTG AVHPPVFDPL VDMDPRLVVS FLDLPRESDI SALVLRFGGE  900
CELVWLNDKN ALAVFSDPAR AATAMRRLDH GSIYTGAIAF VQSGGASSAN NAWGGTGPSS  960
AVKANPWKKA VVQELGWKED SWGGDESLGV TSDPGSAWKG KDAPIAASVN RWSVLDSETG  1020
VSSSSGAVRS EDPSKLAGVQ SLSKMDSNAA NSSSAGLLGG GLNETEPLEV VDDWEKAYE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484261.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0D2Q4110.0A0A0D2Q411_GOSRA; Uncharacterized protein
STRINGGorai.006G058600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59552647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]