PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G047300.1
Common NameB456_006G047300, LOC105798514
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HD-ZIP
Protein Properties Length: 759aa    MW: 83782.5 Da    PI: 6.6554
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G047300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-1970123356
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                         k ++++++q++eLe++F+++++p++++r+eL+++l L+ +q+k+WFqNrR+++k
  Gorai.006G047300.1  70 KFHRHNPHQIHELESFFKECPHPDEKQRRELSRRLALESKQIKFWFQNRRTQMK 123
                         556899*********************************************999 PP
2START165.63.4e-522734922203
                         HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS
               START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 
                         +a++a++el+k+a+ + p+W k      e +n +e+ ++f++  +     +++ea r++++v+     lv +l+d + +W e+++    +a
  Gorai.006G047300.1 273 VALAAMDELIKMAQMGNPLWIKGFgdgmETLNLEEYKRTFSSFIGmkpsgFTTEATRETAMVPLRGLALVDTLMDAN-RWAEMFPcmisRA 362
                         7899*******************9999999999999999977555999*****************************.************* PP

                         EEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
               START  80 etlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                          t++v+ssg      +alqlm ae+q+lsplvp R   f+R+++q+++ +w+ivdvS++  +  +    +v +++lpSg++i++++n +sk
  Gorai.006G047300.1 363 VTIDVLSSGkgvtrdNALQLMEAEFQVLSPLVPiRQIQFIRFCKQHSDSVWAIVDVSINLSNAAN-ALMFVNCRRLPSGCVIQDMDNKYSK 452
                         ***************************************************************99.9************************ PP

                         EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXX CS
               START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrq 203
                         vtwveh +++++++h llr+l++sg  +ga++w atl+rq
  Gorai.006G047300.1 453 VTWVEHSEYDESTVHHLLRPLLSSGFGFGAQRWIATLRRQ 492
                         *************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-2055125IPR009057Homeodomain-like
SuperFamilySSF466893.72E-1957125IPR009057Homeodomain-like
PROSITE profilePS5007117.16765125IPR001356Homeobox domain
SMARTSM003891.1E-1566129IPR001356Homeobox domain
CDDcd000868.23E-1868125No hitNo description
PfamPF000469.1E-1770123IPR001356Homeobox domain
PROSITE patternPS000270100123IPR017970Homeobox, conserved site
PROSITE profilePS5084839.134263498IPR002913START domain
SuperFamilySSF559613.85E-31264494No hitNo description
CDDcd088758.09E-110267492No hitNo description
SMARTSM002342.9E-32272495IPR002913START domain
PfamPF018523.1E-44273492IPR002913START domain
SuperFamilySSF559614.81E-14537746No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MGVDNRTAFL HSKRMASHGE LRLIGENYDP GFIGMMKEDD GYGSSDDFEG ALGNDQDTAD  60
NGRPPKKKKK FHRHNPHQIH ELESFFKECP HPDEKQRREL SRRLALESKQ IKFWFQNRRT  120
QMKTQLERHE NVFLKQENDK LRAENDLLRQ AIASAICNNC GVPAVPDEIS YEPSQLMIEN  180
SRLKDELNRA RALTNKFLGR HLSSSSANPS PSPSQGLNSN VEVVVRRTGF CGLNNGSTSL  240
PMGFEFGHGA TMPLMNPSFA YEMPYDKSAL VDVALAAMDE LIKMAQMGNP LWIKGFGDGM  300
ETLNLEEYKR TFSSFIGMKP SGFTTEATRE TAMVPLRGLA LVDTLMDANR WAEMFPCMIS  360
RAVTIDVLSS GKGVTRDNAL QLMEAEFQVL SPLVPIRQIQ FIRFCKQHSD SVWAIVDVSI  420
NLSNAANALM FVNCRRLPSG CVIQDMDNKY SKVTWVEHSE YDESTVHHLL RPLLSSGFGF  480
GAQRWIATLR RQYSSLAQLM SPDIHGEDIN TVGKKSMLKL AQRMAYNFSA GIGASSVNKW  540
DNLNVGNVGE DVRVMTRKNV NDPGEPLGIV LSAATSVWMP ITQQTLFGFL RNERMRNQWD  600
ILSSGRPMQA MFSVAKGPGQ GNCVSILRGA AVNGSDTNML ILQETWSDAC GALIVYAPVD  660
ASSIRVVMNG GDSSHVALLP SGFAILPGVQ TDGPSMQPDI DENTSDGCIL TVGFQILVNS  720
VPTAKLTVES VETVNHLLTC TVEKIKAALS VTQLGSVE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3384950.0AY338495.1 Gossypium hirsutum homeodomain protein BNLGHi6313 (bnlghi6313) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484066.10.0PREDICTED: homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A0D2RQG60.0A0A0D2RQG6_GOSRA; Uncharacterized protein
STRINGGorai.006G047300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM112827105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]