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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.006G045100.1 |
| Common Name | B456_006G045100, LOC105798483 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 242aa MW: 27902.7 Da PI: 8.5873 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.006G045100.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.9 | 7.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
+rienk+nrqvtfskRrng+lKK +ELSvLCdaeva+iifss+gkl e++s
Gorai.006G045100.1 9 ERIENKINRQVTFSKRRNGLLKKSYELSVLCDAEVALIIFSSRGKLSEFAS 59
69***********************************************86 PP
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| 2 | K-box | 88.4 | 1.4e-29 | 83 | 171 | 11 | 99 |
K-box 11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
++++l+qe+ +Lk+++e+Lqr+qRhllGe+LesL++keL ++e+qL+++l++ R+kK++llle +eel kke+el+ enk+L+++le
Gorai.006G045100.1 83 LDETQTLYQEVLRLKAKYESLQRSQRHLLGEELESLTVKELYKIEKQLDRALSQARQKKTQLLLERMEELSKKERELEVENKQLKSQLE 171
5679*********************************************************************************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
MGRGKVVLER IENKINRQVT FSKRRNGLLK KSYELSVLCD AEVALIIFSS RGKLSEFASN 60
ISVPTTLEKY WQHRYSSPVD IPLDETQTLY QEVLRLKAKY ESLQRSQRHL LGEELESLTV 120
KELYKIEKQL DRALSQARQK KTQLLLERME ELSKKERELE VENKQLKSQL ELEHCFQSAQ 180
GLGDCSIEMG NEYNMIPSQA NHAQQQSSTH TGYHQFIPQE RVTEDRTVNR SGANKCTAGW 240
L*
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| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during ovule development in the inner and outer integuments. Not detected in young panicles. {ECO:0000269|PubMed:12395189, ECO:0000269|PubMed:19820190}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the floral meristem. Highly expressed in lodicules. Expressed in palea and pistil. Weakly expressed in carpels, empty glumes and stamens. Not detected in lemmas. {ECO:0000269|PubMed:10444103, ECO:0000269|PubMed:19820190}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX587995 | 2e-62 | JX587995.1 Gossypium hirsutum clone NBRI_GE22289 microsatellite sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Li H, et al.
The AGL6-like gene OsMADS6 regulates floral organ and meristem identities in rice.
Cell Res., 2010. 20(3): p. 299-313
[PMID:20038961] - Zhang J,Nallamilli BR,Mujahid H,Peng Z
OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa).
Plant J., 2010. 64(4): p. 604-17
[PMID:20822505] - Seok HY, et al.
Rice ternary MADS protein complexes containing class B MADS heterodimer.
Biochem. Biophys. Res. Commun., 2010. 401(4): p. 598-604
[PMID:20888318] - Li H, et al.
Rice MADS6 interacts with the floral homeotic genes SUPERWOMAN1, MADS3, MADS58, MADS13, and DROOPING LEAF in specifying floral organ identities and meristem fate.
Plant Cell, 2011. 23(7): p. 2536-52
[PMID:21784949] - Yadav SR,Khanday I,Majhi BB,Veluthambi K,Vijayraghavan U
Auxin-responsive OsMGH3, a common downstream target of OsMADS1 and OsMADS6, controls rice floret fertility.
Plant Cell Physiol., 2011. 52(12): p. 2123-35
[PMID:22016342] - Duan Y, et al.
Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
Plant Mol. Biol., 2012. 80(4-5): p. 429-42
[PMID:22933119] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Conrad LJ, et al.
The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.
Plant J., 2014. 80(5): p. 883-94
[PMID:25279942] - Zhang J, et al.
Down-regulation of a LBD-like gene, OsIG1, leads to occurrence of unusual double ovules and developmental abnormalities of various floral organs and megagametophyte in rice.
J. Exp. Bot., 2015. 66(1): p. 99-112
[PMID:25324400] - Bai X, et al.
Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
Sci Rep, 2016. 6: p. 19022
[PMID:26744119] - Zhang B, et al.
A High Temperature-Dependent Mitochondrial Lipase EXTRA GLUME1 Promotes Floral Phenotypic Robustness against Temperature Fluctuation in Rice (Oryza sativa L.).
PLoS Genet., 2016. 12(7): p. e1006152
[PMID:27367609]
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