PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G044300.1
Common NameB456_006G044300, LOC105798476
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 654aa    MW: 72187.6 Da    PI: 5.1778
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G044300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.71.1e-1342876521374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar...svselykalppsetseknsseelaalklfsevs 88 
                         lv+lLl+cAeav+++d   a++++ +l+  ++p gd+mqR+a++fteAL+arla    ++++++++ +p +  ++ns e+l+++++ ++++
  Gorai.006G044300.1 287 LVHLLLACAEAVAKEDYLSARKYIHHLNRVVTPLGDSMQRVASCFTEALSARLAAtmtTSPSTSSSPKPYSPFPSNSLEVLKIYQIVYQAC 377
                         68***************************************************99522234555555555666678*************** PP

                GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                         P++kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s e+++etg+ L+++A++l++pfef+
  Gorai.006G044300.1 378 PYIKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPSGAPFLRITGVGP----SMEAIKETGRSLTELAHSLHIPFEFH 464
                         *************************************************************....************************** PP

                GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                         + + ++led+++++++ + gEalaVn v  lhr++   ++      ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fds
  Gorai.006G044300.1 465 P-IGEKLEDIKPHMFNRRVGEALAVNAVNTLHRVP---GNFL---GNLLAMIRNQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDS 548
                         *.7*******************************9...4443...47******************************************** PP

                GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361
                         l+a++p++s +r+kvE+ ++++ei+n+vaceg+er+erhe+lekWr+ +e  GFk vpls +a++q k ll  ++ dgyr+ e++g+l+lg
  Gorai.006G044300.1 549 LDATFPPDSAQRAKVEQYIFAPEIRNIVACEGSERIERHERLEKWRKLMEGKGFKGVPLSANAVTQSKILLGLYSCDGYRLTEDKGCLLLG 639
                         ******************************************************************************************* PP

                GRAS 362 WkdrpLvsvSaWr 374
                         W+dr+++++SaWr
  Gorai.006G044300.1 640 WQDRAILAASAWR 652
                         ************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.748261632IPR005202Transcription factor GRAS
PfamPF035143.7E-132287652IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 654 aa     Download sequence    Send to blast
MSMINSLCGS MGSIKSENSC ESLVEPKKIA PPSCDMEQNS LTPPSLNFPA VKFELDGDVE  60
VQSPDSSIWE TFFSDHFDAD FMVSSPVRNL PSPQVSSYNF NNVMSMQGQS ILGCSPPPFS  120
PQLGSYSSSS GNKGKGQSPL HRVFNSPNDQ FMQVESLSLP AIEEFLDDGY EDQYQTTKIS  180
GIGTSNNMFE MPTTGPSMLD CISMPNSSTF CGSASETTSS QLDQEQHYQL NCVSRAPLSQ  240
QLQQEKQQEK QISAAAAEQQ QHQNLGHTLM VPIPIGPEQE QDSGLQLVHL LLACAEAVAK  300
EDYLSARKYI HHLNRVVTPL GDSMQRVASC FTEALSARLA ATMTTSPSTS SSPKPYSPFP  360
SNSLEVLKIY QIVYQACPYI KFAHFTANQA IFEAFETEER VHVIDLDILQ GYQWPAFMQA  420
LAARPSGAPF LRITGVGPSM EAIKETGRSL TELAHSLHIP FEFHPIGEKL EDIKPHMFNR  480
RVGEALAVNA VNTLHRVPGN FLGNLLAMIR NQAPNIVTLV EQEASHNGPY FLGRFLEALH  540
YYSAIFDSLD ATFPPDSAQR AKVEQYIFAP EIRNIVACEG SERIERHERL EKWRKLMEGK  600
GFKGVPLSAN AVTQSKILLG LYSCDGYRLT EDKGCLLLGW QDRAILAASA WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1012756517378Protein SCARECROW
5b3h_A1e-1012756516377Protein SCARECROW
5b3h_D1e-1012756516377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5784731e-143JX578473.1 Gossypium hirsutum clone NBRI_GE10507 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012484004.10.0PREDICTED: DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A0D2SS290.0A0A0D2SS29_GOSRA; Uncharacterized protein
STRINGGorai.006G044300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM165101013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-101RGA-like 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  3. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]