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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.006G025000.1 | ||||||||
Common Name | B456_006G025000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 285aa MW: 31151.2 Da PI: 4.7738 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.2 | 3.3e-11 | 5 | 35 | 14 | 44 |
HHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsstg 44 kRr g+ KK EL +LC++e++++++s++ Gorai.006G025000.1 5 KKRRLGLVKKVMELTTLCGTEACLVMYSPDK 35 69**************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.9E-4 | 1 | 43 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 10.736 | 1 | 32 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.17E-17 | 4 | 60 | No hit | No description |
Pfam | PF00319 | 5.3E-11 | 5 | 37 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.85E-14 | 5 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSKLKKRRLG LVKKVMELTT LCGTEACLVM YSPDKQPPVV WPSHNEVQRL IEKFYQAPEK 60 NMELEAGQFM LQIHQVPCFS CSSSQVILDE LEAAQFMLQI HQGKMLDDFN VNELDCLIWY 120 VETMWTDIRK RREYYQRFPS SSAAPAQGYV PLPPPSQSPA TTDQIGDAKA MVRGGASSSI 180 SSVRVAPQNV VVDHLRLPRP PSGGSSSASP FMIFEFPNTD IDLPEGDNLG LFGGQDVGPG 240 HYPLGPLGSS CPASEFGRNY FEVFSGESSS SSGATSGSET EETS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012453454.1 | 1e-66 | PREDICTED: agamous-like MADS-box protein AGL92 | ||||
Refseq | XP_016718734.1 | 1e-66 | PREDICTED: uncharacterized protein LOC107931364 | ||||
TrEMBL | A0A0D2NKR0 | 0.0 | A0A0D2NKR0_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.006G025000.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-14 | AGAMOUS-like 80 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.006G025000.1 |
Publications ? help Back to Top | |||
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