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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.006G008800.1 |
| Common Name | B456_006G008800 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
bHLH |
| Protein Properties |
Length: 354aa MW: 39959.6 Da PI: 6.0074 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.006G008800.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 53.4 | 4.5e-17 | 188 | 234 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq
Gorai.006G008800.1 188 VHNLSERRRRDRINEKMRALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 234
6*************************8.....6******************9 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009585 | Biological Process | red, far-red light phototransduction |
| GO:0009693 | Biological Process | ethylene biosynthetic process |
| GO:0010244 | Biological Process | response to low fluence blue light stimulus by blue low-fluence system |
| GO:0010600 | Biological Process | regulation of auxin biosynthetic process |
| GO:0010928 | Biological Process | regulation of auxin mediated signaling pathway |
| GO:0005634 | Cellular Component | nucleus |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MSFKASICLA MNHCSSDWNF ESDLPISNQK KLLDNELVEL LWQNGKVVLQ SQTHKKQDDE 60
TVSWIQHPFE ESFEKEMFSN FFSEFPVYDP MDHQHEQQED DKNLSRGSSN GIGTTSTGLS 120
VGTSKDDEDD DNGGQVENEK GTSGGVTSSQ KRKNRDGRED YECQCEFAEV KPVRRSGSCR 180
RQSRAAEVHN LSERRRRDRI NEKMRALQEL IPHCNKTDKA SMLDEAIEYL KSLQLQLQVM 240
WMGNGMAPMM FPGIQHYMSP MAMGTAPPTM PSIQNQRFIQ NPTFSEQYAR FLGFHHMQTA 300
SQPINMFGYG SQTTPQSPTV LGFSNGSNPL NGGTTATNNT SLSGKIVLWR LLY*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in the node portions of the stem. Expressed in the leaves and the basal part of shoots. {ECO:0000269|PubMed:22984180}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may act as negative regulator of phyB-dependent light signal transduction (PubMed:17485859). Transcription activator that acts as positive regulator of internode elongation. May function via regulation of cell wall-related genes. May play a role in a drought-associated growth-restriction mechanism in response to drought stress (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by light in dark-grown etiolated seedlings (PubMed:17485859). Circadian oscillation under 12 h light/12 h dark cycle conditions, with peaks in the middle of the light period (PubMed:17485859, PubMed:22984180). Down-regulated by cold and drought stresses (PubMed:22984180). {ECO:0000269|PubMed:17485859, ECO:0000269|PubMed:22984180}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ525802 | 4e-67 | HQ525802.1 Gossypium herbaceum clone NBRI_D_EYT27PB02DXEGO simple sequence repeat marker, mRNA sequence. |
| Publications
? help Back to Top |
- Kikuchi S, et al.
Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
Science, 2003. 301(5631): p. 376-9
[PMID:12869764] - Nakamura Y,Kato T,Yamashino T,Murakami M,Mizuno T
Characterization of a set of phytochrome-interacting factor-like bHLH proteins in Oryza sativa.
Biosci. Biotechnol. Biochem., 2007. 71(5): p. 1183-91
[PMID:17485859] - Zhao XL,Shi ZY,Peng LT,Shen GZ,Zhang JL
An atypical HLH protein OsLF in rice regulates flowering time and interacts with OsPIL13 and OsPIL15.
N Biotechnol, 2011. 28(6): p. 788-97
[PMID:21549224] - Todaka D, et al.
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
Proc. Natl. Acad. Sci. U.S.A., 2012. 109(39): p. 15947-52
[PMID:22984180] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886]
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