PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G257800.1 | ||||||||
Common Name | B456_005G257800, LOC105795442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NAC | ||||||||
Protein Properties | Length: 282aa MW: 32687.4 Da PI: 8.5418 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 149.5 | 1.6e-46 | 18 | 144 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPt+eel+ +yLk+ + +kkl+ ++i +iy+++PwdLp k +e+ewyf+++rd+k+ +g r+nr+t++g+Wkatg+d++++ Gorai.005G257800.1 18 PGFRFHPTEEELLEFYLKNMIYDKKLRY-DIIGYHNIYHHDPWDLPGLSKIGEREWYFYVPRDRKHGSGGRPNRTTANGFWKATGSDRKIV 107 9**************************9.99***************8778899*************************************9 PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++ +glkktLvfykgrap+g ktdWvm+eyrl Gorai.005G257800.1 108 SLsdPKRIIGLKKTLVFYKGRAPRGCKTDWVMNEYRL 144 97666778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 52.815 | 16 | 162 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.16E-55 | 17 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-24 | 18 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MSSQSSMDDN ATPKIELPGF RFHPTEEELL EFYLKNMIYD KKLRYDIIGY HNIYHHDPWD 60 LPGLSKIGER EWYFYVPRDR KHGSGGRPNR TTANGFWKAT GSDRKIVSLS DPKRIIGLKK 120 TLVFYKGRAP RGCKTDWVMN EYRLPDGCSL PKDVVLCKVY RKATSLKVLE QRAAMEEELK 180 AIKNTSRSSP LSSMETISFC SPKEAQVPAP QMFCKKENEE EQEQETMVEK NRCLQLPLGS 240 EKLPELQMPK VLSDWTQDQF WTQLNSPWFQ NLTTYANILN F* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-45 | 18 | 162 | 17 | 168 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC847197 | 0.0 | KC847197.1 Gossypium hirsutum NAC domain protein NAC20 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001313931.1 | 0.0 | NAC transcription factor 29-like | ||||
Refseq | XP_012480516.1 | 0.0 | PREDICTED: NAC transcription factor 29-like | ||||
Swissprot | Q10S65 | 1e-94 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A0D2RTA9 | 0.0 | A0A0D2RTA9_GOSRA; Uncharacterized protein | ||||
TrEMBL | W6J8W2 | 0.0 | W6J8W2_GOSHI; NAC domain protein NAC20 | ||||
STRING | Gorai.005G257800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3899 | 28 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 1e-117 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G257800.1 |
Entrez Gene | 105795442 |
Publications ? help Back to Top | |||
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