PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G252200.2 | ||||||||
Common Name | B456_005G252200, LOC105795386 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 345aa MW: 38041.5 Da PI: 6.5284 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29.4 | 1.5e-09 | 60 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N+ f eL l ++ +K++Ka+iL+ +++ +k+L Gorai.005G252200.2 60 LQKADREKSRRDRLNEHFLELGNALDPD----RPKNDKATILTDTIQLLKDL 107 56778********************997....79***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.42E-13 | 57 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.16 | 57 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.5E-12 | 58 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.46E-9 | 58 | 111 | No hit | No description |
Pfam | PF00010 | 2.5E-7 | 60 | 107 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-7 | 63 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MDQLRKDVAF LPSIPSSNPS IIEFRQPPVD PLVPSTARTQ SKSGQRDGEE PKDCVTARKL 60 QKADREKSRR DRLNEHFLEL GNALDPDRPK NDKATILTDT IQLLKDLTSQ VTKLKGEHAM 120 LTEESRELTV EKNDLKDEKA SLKSEIDDLN IQYQQRVRTM FPWASVDYPV VMAPPSYPFP 180 VPMAMPPPGA IPMHPSMQPF PFFGNQNPGV IHNPCSTFVP YMTPNTMVEQ QPTQHVTPPA 240 QPSGRSHASG KEDSKNKSSG ESKIEKTVDS NDVATDLELK TPGSTADQDF SSGQRKLKKS 300 LRKENSNTEG SFSSRCSSSY SAQDSSSNSV VGGKKADDLD GRND* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480446.1 | 0.0 | PREDICTED: transcription factor bHLH121 | ||||
Refseq | XP_012480447.1 | 0.0 | PREDICTED: transcription factor bHLH121 | ||||
Swissprot | Q9LT23 | 1e-91 | BH121_ARATH; Transcription factor bHLH121 | ||||
TrEMBL | A0A0D2RLA4 | 0.0 | A0A0D2RLA4_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G252200.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19860.1 | 3e-84 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G252200.2 |
Entrez Gene | 105795386 |
Publications ? help Back to Top | |||
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