PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TALE

Protein Properties

Length: 662aa MW: 73365.5 Da PI: 6.5869

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G246400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	401	438	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gL+ +qV++WF N R + Gorai.005G246400.1 401 FEHflHPYPKDSEKIMLARQTGLSRSQVSNWFINARVR 438 664459******************************88 PP
2	BELL	126.7	8.3e-41	263	334	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+a+ag+g+akpYt++A+++iSrhFrcLkd i +qi Gorai.005G246400.1 263 ERQELQSKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDAIAGCGAAKPYTAVAQQTISRHFRCLKDTINGQI 334 79********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	5.1E-60	192	332	IPR006563	POX domain
Pfam	PF07526	8.5E-50	198	330	IPR006563	POX domain
PROSITE profile	PS50071	12.293	379	442	IPR001356	Homeobox domain
SMART	SM00389	5.7E-10	382	446	IPR001356	Homeobox domain
CDD	cd00086	1.08E-12	382	443	No hit	No description
SuperFamily	SSF46689	1.58E-17	383	449	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-28	385	448	IPR009057	Homeodomain-like
Pfam	PF05920	4.6E-18	399	438	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 662 aa Download sequence Send to blast
MATYYTGSDN QRDTVLMIYM RESMPGSYAE SPVLQGNTMM YMNSGSYSDA FAGNSQQQNN 60 CIGMQGVEAS DSTSQQHGIM SNLGGSHVVE HDFGAWRDAS SILHNGQNFQ GPQGLSLRLG 120 TQIPFGIQMP SIPFRNPDSD LASFLSHNPS LTGGRNGSSR DEQPRNAGYL PHGFSGANQG 180 TNKGDLYACG MSSMSRAIPN SKYLKAAQQL LDEVVNVPKA LKQIDGEKNR MKSCKEDDES 240 SKNVLSNQKE SSNNIQKELS HAERQELQSK LTKLLSMLDE VDRRYKQYYH QMQIVVSSFD 300 AIAGCGAAKP YTAVAQQTIS RHFRCLKDTI NGQIQATRKS LGEQDTLEDG KGVRITRLRY 360 VEQQLRQQKA LQQLGMMPQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK DSEKIMLARQ 420 TGLSRSQVSN WFINARVRLW KPMVEEMYKE EFADLEMDSH SSSENAVKAR KGNTRTSEDI 480 GEDQQQSGSS SATERCSAGQ LVDSKSNHVP DVDIAGTITT TVFQNVTHRE AETEYGLLRL 540 SEVQRPNVDN SNLFLDGITH SDGVGDRFMK ATTTSYHVSE LGRFGNASGV SLTLGLQHCE 600 DGSIPMSDVG HQNFVAMTRD NDIYNPAASS IGPETTDSEY VTPGNRQHRF NSSHLLHDFV 660 A*

Sequence ? help Back to Top

Protein Sequence Length: 662 aa Download sequence Send to blast

MATYYTGSDN QRDTVLMIYM RESMPGSYAE SPVLQGNTMM YMNSGSYSDA FAGNSQQQNN  60
CIGMQGVEAS DSTSQQHGIM SNLGGSHVVE HDFGAWRDAS SILHNGQNFQ GPQGLSLRLG  120
TQIPFGIQMP SIPFRNPDSD LASFLSHNPS LTGGRNGSSR DEQPRNAGYL PHGFSGANQG  180
TNKGDLYACG MSSMSRAIPN SKYLKAAQQL LDEVVNVPKA LKQIDGEKNR MKSCKEDDES  240
SKNVLSNQKE SSNNIQKELS HAERQELQSK LTKLLSMLDE VDRRYKQYYH QMQIVVSSFD  300
AIAGCGAAKP YTAVAQQTIS RHFRCLKDTI NGQIQATRKS LGEQDTLEDG KGVRITRLRY  360
VEQQLRQQKA LQQLGMMPQH AWRPQRGLPE SSVSILRAWL FEHFLHPYPK DSEKIMLARQ  420
TGLSRSQVSN WFINARVRLW KPMVEEMYKE EFADLEMDSH SSSENAVKAR KGNTRTSEDI  480
GEDQQQSGSS SATERCSAGQ LVDSKSNHVP DVDIAGTITT TVFQNVTHRE AETEYGLLRL  540
SEVQRPNVDN SNLFLDGITH SDGVGDRFMK ATTTSYHVSE LGRFGNASGV SLTLGLQHCE  600
DGSIPMSDVG HQNFVAMTRD NDIYNPAASS IGPETTDSEY VTPGNRQHRF NSSHLLHDFV  660
A*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	3e-16	388	445	1	58	Homeobox protein Meis1
4xrs_B	3e-16	388	445	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480369.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Refseq	XP_012480370.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
TrEMBL	A0A0D2RSY5	0.0	A0A0D2RSY5_GOSRA; Uncharacterized protein
STRING	Gorai.005G246400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2869	25	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-144	BEL1-like homeodomain 6

Link Out ? help Back to Top
Phytozome	Gorai.005G246400.1
Entrez Gene	105795334

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]