PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G244200.1 | ||||||||
Common Name | B456_005G244200, LOC105795311 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 29370.1 Da PI: 9.017 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 26.6 | 1.1e-08 | 196 | 243 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er R ++i +++ L+ l+P + +k Ka +L + ++Y++sLq Gorai.005G244200.1 196 SHSLAERVRKEKISERLKYLQNLVPRC----NKITGKAGMLDEIINYVQSLQ 243 8**************************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-16 | 190 | 261 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.50E-8 | 190 | 247 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.9E-17 | 192 | 259 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.424 | 192 | 242 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-6 | 196 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.0E-6 | 198 | 248 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MNRALPEILQ RSDMTVKEQT YFNELSGVIS TQSTHVNSFH GGLMSDDSVL TREGKEPSWS 60 EFGKLEKATL GFQPCEYGNE PSFNIDYAIS RTSSRQPPVL AAVAASEAAE NMGSSVGRES 120 YKKRKADKLQ NSKAVVEDGS TKKIKACEEE EKESKITGPP STTIKSNSYK ANSKVSEVQK 180 PDYIHVRARR GQATDSHSLA ERVRKEKISE RLKYLQNLVP RCNKITGKAG MLDEIINYVQ 240 SLQRQVEFLS MEIAAVNPRL DFN* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, and stems. {ECO:0000269|PubMed:12679534}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds DNA to G box 5'-CACGTG-3' and, to a lower extent, to E-box 5'-CANNTG-3' in vitro. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light. {ECO:0000269|PubMed:18988809, ECO:0000269|PubMed:24130508}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Accumulates strongly in response to blue light due to reduced preventing 26S proteasome-mediated degradation in an ADO1/ZTL and ADO2/LKP2 dependent manner, but levels decrease in the absence of blue light via 26S proteasome degradation (at protein level). {ECO:0000269|PubMed:24101505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ527717 | 1e-121 | HQ527717.1 Gossypium herbaceum clone NBRI_C_EYT27PB01AQJSU simple sequence repeat marker, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480332.1 | 0.0 | PREDICTED: transcription factor bHLH63 isoform X1 | ||||
Refseq | XP_012480333.1 | 0.0 | PREDICTED: transcription factor bHLH63 isoform X1 | ||||
Swissprot | Q8GY61 | 5e-48 | BH063_ARATH; Transcription factor bHLH63 | ||||
Swissprot | Q9SRT2 | 8e-48 | BH062_ARATH; Transcription factor bHLH62 | ||||
TrEMBL | A0A0D2RL36 | 0.0 | A0A0D2RL36_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G244200.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5947 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34530.1 | 4e-48 | cryptochrome-interacting basic-helix-loop-helix 1 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G244200.1 |
Entrez Gene | 105795311 |