PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G241200.1
Common NameB456_005G241200, LOC105796037
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 129aa    MW: 14784.2 Da    PI: 10.1063
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G241200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.21.1e-1618109392
                         EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                  B3   3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr 87 
                         k+lt  dv+ +  +++p   ++eh    +g+  +s + +++d+ +++W+++l  rk++g+   vltkGW +Fvk  gL++gD v+F l+g+
  Gorai.005G241200.1  18 KILTATDVGVR--FSFPTATMREHfkllEGS--QSLDFQVMDKYSKVWTFRLYTRKNDGHpkPVLTKGWLDFVKRMGLRVGDKVIFVLHGN 104
                         66777777765..7***********977555..7889***************6688888899*************************9998 PP

                         SEE.. CS
                  B3  88 sefel 92 
                         ++ +l
  Gorai.005G241200.1 105 HNDHL 109
                         77633 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-2113115IPR015300DNA-binding pseudobarrel domain
CDDcd100177.56E-1715115No hitNo description
SuperFamilySSF1019363.92E-1916116IPR015300DNA-binding pseudobarrel domain
SMARTSM010197.2E-1116115IPR003340B3 DNA binding domain
PfamPF023623.4E-1318108IPR003340B3 DNA binding domain
PROSITE profilePS5086310.16553115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MHMQSSESEP VMKELCSKIL TATDVGVRFS FPTATMREHF KLLEGSQSLD FQVMDKYSKV  60
WTFRLYTRKN DGHPKPVLTK GWLDFVKRMG LRVGDKVIFV LHGNHNDHLG ILVKRNLKLL  120
GSEHWGDL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012481134.13e-91PREDICTED: B3 domain-containing protein Os02g0764100-like
TrEMBLA0A0D2PY986e-90A0A0D2PY98_GOSRA; Uncharacterized protein
STRINGGorai.005G241200.11e-90(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17815410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.17e-09VP1/ABI3-like 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]