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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.005G232500.2 |
Common Name | B456_005G232500, LOC105795188 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LBD |
Protein Properties |
Length: 207aa MW: 21475.1 Da PI: 4.7975 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.005G232500.2 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 55.2 | 2.1e-17 | 2 | 94 | 1 | 98 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
+C++C++lr++C+++C+l++ + p++q++++ +v+k+FG++ ++++l+++ +r+ ra +Pv+Gavg++++++++++
Gorai.005G232500.2 2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPV----------GRAINPVSGAVGLLWTGNWNVC 84
6**********************99*********************************995..........89******************** PP
DUF260 89 qlkaelallk 98
q++++++l++
Gorai.005G232500.2 85 QSAVQTVLQG 94
***9988765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR 60 PVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS DFEDVGETVG 120 VGGGGGAGGP CIQSGGFVDV VECKASDLNL CLMIGDDDRA VQRRRESTSS EESETTTLGS 180 RFSGDGNSSN DSCGADGERK LLRLFI*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX581778 | 2e-89 | JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence. |