PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G232500.1
Common NameB456_005G232500, LOC105795188
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family LBD
Protein Properties Length: 217aa    MW: 22595.4 Da    PI: 4.6777
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G232500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.91.6e-282104198
              DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                         +C++C++lr++C+++C+l++ +     p++q++++ +v+k+FG++ ++++l+++   +r+++++sl++eA  ra +Pv+Gavg++++++++
  Gorai.005G232500.1   2 SCNGCRILRKGCSENCMLRQSLqcienPQAQAHATVFVAKFFGRAGLMSFLSSVASPQRPALFQSLLFEAVGRAINPVSGAVGLLWTGNWN 92 
                         6**********************99****************************************************************** PP

              DUF260  87 leqlkaelallk 98 
                         ++q++++++l++
  Gorai.005G232500.1  93 VCQSAVQTVLQG 104
                         *****9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.6541107IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-242101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MSCNGCRILR KGCSENCMLR QSLQCIENPQ AQAHATVFVA KFFGRAGLMS FLSSVASPQR  60
PALFQSLLFE AVGRAINPVS GAVGLLWTGN WNVCQSAVQT VLQGGTLQPL PEFSGGVSGS  120
DFEDVGETVG VGGGGGAGGP CIQSGGFVDV VECKASDLNL CLMIGDDDRA VQRRRESTSS  180
EESETTTLGS RFSGDGNSSN DSCGADGERK LLRLFI*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5817782e-89JX581778.1 Gossypium hirsutum clone NBRI_GE14483 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480162.11e-155PREDICTED: LOB domain-containing protein 38-like isoform X1
SwissprotQ9SN235e-60LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A0D2RK811e-153A0A0D2RK81_GOSRA; Uncharacterized protein
STRINGGorai.005G232500.11e-154(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2226945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.14e-62LOB domain-containing protein 38
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]