PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G232300.1

Common Name

B456_005G232300, LOC105795187

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 276aa MW: 29360.3 Da PI: 8.0066

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G232300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00032	106	128	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC+ C+k F++ L H +H Gorai.005G232300.1 106 YKCSVCNKAFPSYQALGGHKASH 128 9***********99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	7.0E-14	106	130	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.1E-9	106	128	No hit	No description
PROSITE profile	PS50157	10.325	106	133	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0057	106	128	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	108	128	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.1E-9	155	182	No hit	No description
Pfam	PF13912	6.0E-13	159	184	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.432	160	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	160	182	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	162	182	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MALEALKSPT MATAPYSNKY EDIDNNYVDT WKKGKRSKRQ RDDGSSSSPP PPPPPTNEEE 60 YLALCLIMLA RGGSTTENAV TDGGNDDHRL SSSSSAPAPA ALKLSYKCSV CNKAFPSYQA 120 LGGHKASHRK SSTDAKPDNQ SITTSSTTAS GETGGNGKAH KCSICHKSFP TGQALGGHKR 180 CHYEGGNTTT TTTTNNNNNN NKSSSVSLSG VTVSDGGALS QTRCVDFDFD LNLPALCELE 240 IKDGSRFSQI YTEQEVESPL PTKKPRFMTA SLSQH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM002632	0.0	HM002632.1 Gossypium hirsutum C2H2 zinc finger protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480161.1	0.0	PREDICTED: zinc finger protein ZAT10
TrEMBL	A0A0D2SM80	0.0	A0A0D2SM80_GOSRA; Uncharacterized protein
STRING	Gorai.005G232300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1211	28	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27730.1	2e-45	salt tolerance zinc finger

Link Out ? help Back to Top
Phytozome	Gorai.005G232300.1
Entrez Gene	105795187

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]