PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G226700.4
Common NameB456_005G226700
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C2H2
Protein Properties Length: 333aa    MW: 37337.1 Da    PI: 9.731
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G226700.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00047295314120
                         EEETTTTEEESSHHHHHHHH CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                         ++C +C+ ++ r+++L++H+
  Gorai.005G226700.4 295 FRCAICNITCGRSEDLNSHL 314
                         89*****************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031345.3E-10340IPR004345TB2/DP1/HVA22-related protein
SuperFamilySSF576677.44E-11144188No hitNo description
SMARTSM004512.1E-4155189IPR003604Zinc finger, U1-type
PfamPF128745.0E-10158182No hitNo description
SMARTSM003550.44158182IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.26E-7283324No hitNo description
SMARTSM004510.004292326IPR003604Zinc finger, U1-type
PfamPF128741.9E-4295319No hitNo description
SMARTSM0035510295319IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGILQWLPFW PYMKLTIVCW MMIPHFDGAF YVYNHFVHPC LYMDLPTIIN WFKKQQDLFL  60
KDNFLVEVAD DFVKAHGPTE VQEKLIANEP KGTETSILQK GIKPVQIAEK SEVAPILKTD  120
PNVIQTVNNT TVTLSETVGE VGPDLPKISS DKQVQKEWTC AMCQVTTTSE KTLKSHLQGR  180
KHKNKLMQAN NQPCKGKAGL ASKVKQSEVS RKEPQKKGSK NYEPPKGQMS ASSAACSNAV  240
NPKTEMSKSN LPKEEWKKVI PTTNMVGNHV KSSENVQGQQ QQVEKEHNKT KIPQFRCAIC  300
NITCGRSEDL NSHLWGRKHL AKLNSLGRGQ LA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012480067.10.0PREDICTED: uncharacterized protein LOC105795126 isoform X1
TrEMBLA0A0D2SLY30.0A0A0D2SLY3_GOSRA; HVA22-like protein
STRINGGorai.005G226700.10.0(Gossypium raimondii)
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]