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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G226700.3 | ||||||||
Common Name | B456_005G226700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | C2H2 | ||||||||
Protein Properties | Length: 379aa MW: 42525.1 Da PI: 9.4949 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00055 | 341 | 360 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C +C+ ++ r+++L++H+ Gorai.005G226700.3 341 FRCAICNITCGRSEDLNSHL 360 89*****************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03134 | 3.9E-20 | 15 | 86 | IPR004345 | TB2/DP1/HVA22-related protein |
SuperFamily | SSF57667 | 7.74E-11 | 190 | 234 | No hit | No description |
SMART | SM00451 | 2.1E-4 | 201 | 235 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 5.9E-10 | 204 | 228 | No hit | No description |
SMART | SM00355 | 0.44 | 204 | 228 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.58E-7 | 330 | 370 | No hit | No description |
SMART | SM00451 | 0.004 | 338 | 372 | IPR003604 | Zinc finger, U1-type |
Pfam | PF12874 | 2.2E-4 | 341 | 365 | No hit | No description |
SMART | SM00355 | 10 | 341 | 365 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 343 | 365 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 379 aa Download sequence Send to blast |
MLSFSCLASL CFRVSSAIEA NSNTDTKKLV TYWIIFSLIS LFEHAFMGIL QWLPFWPYMK 60 LTIVCWMMIP HFDGAFYVYN HFVHPCLYMD LPTIINWFKK QQDLFLKDNF LVEVADDFVK 120 AHGPTEVQEK LIANEPKGTE TSILQKGIKP VQIAEKSEVA PILKTDPNVI QTVNNTTVTL 180 SETVGEVGPD LPKISSDKQV QKEWTCAMCQ VTTTSEKTLK SHLQGRKHKN KLMQANNQPC 240 KGKAGLASKV KQSEVSRKEP QKKGSKNYEP PKGQMSASSA ACSNAVNPKT EMSKSNLPKE 300 EWKKVIPTTN MVGNHVKSSE NVQGQQQQVE KEHNKTKIPQ FRCAICNITC GRSEDLNSHL 360 WGRKHLAKLN SLGRGQLA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012480067.1 | 0.0 | PREDICTED: uncharacterized protein LOC105795126 isoform X1 | ||||
TrEMBL | A0A0D2SLY3 | 0.0 | A0A0D2SLY3_GOSRA; HVA22-like protein | ||||
STRING | Gorai.005G226700.1 | 0.0 | (Gossypium raimondii) |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G226700.3 |
Publications ? help Back to Top | |||
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