PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G226700.1

Common Name

B456_005G226700, LOC105795126

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 396aa MW: 44436.4 Da PI: 9.5708

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G226700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00058	358	377	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C +C+ ++ r+++L++H+ Gorai.005G226700.1 358 FRCAICNITCGRSEDLNSHL 377 89*****************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03134	2.9E-22	27	103	IPR004345	TB2/DP1/HVA22-related protein
SuperFamily	SSF57667	8.25E-11	207	251	No hit	No description
SMART	SM00451	2.1E-4	218	252	IPR003604	Zinc finger, U1-type
Pfam	PF12874	6.2E-10	221	245	No hit	No description
SMART	SM00355	0.44	221	245	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.73E-7	347	387	No hit	No description
SMART	SM00451	0.004	355	389	IPR003604	Zinc finger, U1-type
Pfam	PF12874	2.4E-4	358	382	No hit	No description
SMART	SM00355	10	358	382	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	360	382	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0016021	Cellular Component	integral component of membrane
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MGFQALVNLA LICFHSLAWP LFALGYPLRA SIQAIEANSN TDTKKLVTYW IIFSLISLFE 60 HAFMGILQWL PFWPYMKLTI VCWMMIPHFD GAFYVYNHFV HPCLYMDLPT IINWFKKQQD 120 LFLKDNFLVE VADDFVKAHG PTEVQEKLIA NEPKGTETSI LQKGIKPVQI AEKSEVAPIL 180 KTDPNVIQTV NNTTVTLSET VGEVGPDLPK ISSDKQVQKE WTCAMCQVTT TSEKTLKSHL 240 QGRKHKNKLM QANNQPCKGK AGLASKVKQS EVSRKEPQKK GSKNYEPPKG QMSASSAACS 300 NAVNPKTEMS KSNLPKEEWK KVIPTTNMVG NHVKSSENVQ GQQQQVEKEH NKTKIPQFRC 360 AICNITCGRS EDLNSHLWGR KHLAKLNSLG RGQLA*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MGFQALVNLA LICFHSLAWP LFALGYPLRA SIQAIEANSN TDTKKLVTYW IIFSLISLFE  60
HAFMGILQWL PFWPYMKLTI VCWMMIPHFD GAFYVYNHFV HPCLYMDLPT IINWFKKQQD  120
LFLKDNFLVE VADDFVKAHG PTEVQEKLIA NEPKGTETSI LQKGIKPVQI AEKSEVAPIL  180
KTDPNVIQTV NNTTVTLSET VGEVGPDLPK ISSDKQVQKE WTCAMCQVTT TSEKTLKSHL  240
QGRKHKNKLM QANNQPCKGK AGLASKVKQS EVSRKEPQKK GSKNYEPPKG QMSASSAACS  300
NAVNPKTEMS KSNLPKEEWK KVIPTTNMVG NHVKSSENVQ GQQQQVEKEH NKTKIPQFRC  360
AICNITCGRS EDLNSHLWGR KHLAKLNSLG RGQLA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012480067.1	0.0	PREDICTED: uncharacterized protein LOC105795126 isoform X1
TrEMBL	A0A0D2NH59	0.0	A0A0D2NH59_GOSRA; HVA22-like protein
STRING	Gorai.005G226700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20603	3	4

Link Out ? help Back to Top
Phytozome	Gorai.005G226700.1
Entrez Gene	105795126

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]