PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GATA

Protein Properties

Length: 391aa MW: 43485.8 Da PI: 5.784

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G226000.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	47	3.4e-15	184	220	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg + Tp +Rrgp g++tLCnaCGl+++ kg+ Gorai.005G226000.1 184 CQHCGINEklTPAMRRGPAGPRTLCNACGLMWANKGT 220 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	3.5E-6	50	85	IPR010399	Tify domain
PROSITE profile	PS51320	12.258	50	85	IPR010399	Tify domain
Pfam	PF06200	4.0E-9	54	84	IPR010399	Tify domain
Pfam	PF06203	6.9E-15	118	160	IPR010402	CCT domain
PROSITE profile	PS51017	12.818	118	160	IPR010402	CCT domain
SMART	SM00401	4.1E-9	178	231	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	4.32E-11	182	232	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.3E-14	182	224	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	2.07E-14	183	230	No hit	No description
Pfam	PF00320	7.5E-13	184	220	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	184	211	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA 60 FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA 120 SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV 180 LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKGT LRDLRKGGRS THFDSKELET 240 PTDIKPSTLE PENSFANNDE QGSPQEKKPV PMDSENHLIT SNEQILVGHY ISNLRYRVAR 300 DCIFAHYQVA NDPILLIHQI LSTDMQEFAQ NSHPFLIHVE NSSVNLDNED IQETLEELAD 360 ASGSDFEIPS HFDEQVDIDD SNIVTLWPGT *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MVDGVAMDTV NQRGLLGRPY GYLHDDGGFE RKDIKGAHKA VMNGVMSSVQ PTRTSELTIA  60
FEGEVYVFPA VTSEKVQAVL LLLGGCDTSI NVPSSEFLLQ EKVKVVGDSS RGSKISRRIA  120
SLVRFREKRK ERCFEKKIRY TCRKEVAQRM HRKNGQFASV KDSNSGEGSC DQSDDTPDSV  180
LRSCQHCGIN EKLTPAMRRG PAGPRTLCNA CGLMWANKGT LRDLRKGGRS THFDSKELET  240
PTDIKPSTLE PENSFANNDE QGSPQEKKPV PMDSENHLIT SNEQILVGHY ISNLRYRVAR  300
DCIFAHYQVA NDPILLIHQI LSTDMQEFAQ NSHPFLIHVE NSSVNLDNED IQETLEELAD  360
ASGSDFEIPS HFDEQVDIDD SNIVTLWPGT *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691713.1	0.0	PREDICTED: GATA transcription factor 19-like isoform X1
TrEMBL	A0A0D2RJY5	0.0	A0A0D2RJY5_GOSRA; Uncharacterized protein
STRING	Gorai.005G226000.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12294	14	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.1	2e-48	ZIM-like 1

Link Out ? help Back to Top
Phytozome	Gorai.005G226000.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]