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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G220600.5 | ||||||||
Common Name | B456_005G220600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | CAMTA | ||||||||
Protein Properties | Length: 816aa MW: 90953.9 Da PI: 4.9766 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 184.5 | 1.2e-57 | 20 | 136 | 2 | 118 |
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l+ ++rwl++ ei++iL n++k+++++e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+een+ Gorai.005G220600.5 20 LEAQHRWLRPAEICEILRNYQKFHISSEPPTGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENE 110 5679*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Le++l++iv+vhylevk Gorai.005G220600.5 111 NFQRRSYWMLEQDLTHIVFVHYLEVK 136 ***********************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 82.804 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 8.0E-82 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.7E-51 | 21 | 135 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 1.0E-6 | 465 | 564 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 8.54E-17 | 478 | 564 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 5.7E-6 | 478 | 551 | IPR002909 | IPT domain |
CDD | cd00204 | 2.84E-15 | 660 | 769 | No hit | No description |
PROSITE profile | PS50297 | 19.014 | 660 | 771 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 2.49E-18 | 663 | 771 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.0E-19 | 663 | 773 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.6E-6 | 682 | 771 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.458 | 710 | 742 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.019 | 710 | 739 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1800 | 749 | 778 | IPR002110 | Ankyrin repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MADQASYSLA PRLDIDHILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML 120 EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSASPTSTL 180 TSLCEDADSD SHQASSRFCT LPQQGNASVM DKIDSGFLNH FSPHQYPGWS SIPGVNEVSH 240 LHGDRPRDID YGTCMTEARK TPDLPSWEQD LGQYLPVCAA ASSHTSATST QPDTMSISLQ 300 QQNMMKGKLL TVKSASAEFG NPLSTESNWQ IPSADNALEL PKWLMDSSSN FELPYDTRFF 360 EQKTHDFQLP NALEEITSHD VLKDDDSDSV TKTYPENDIY LDGNVNYAFS LKKSLLNGEE 420 NLKKVDSFSR WITKELGEVD DLQMQSSSGL AWSTVECGNV SDDASLSPSL SQDQLFSIVD 480 FSPKWAYIDL ETEVLIIGTF LKSQEEVAKY NWSCMFGEVE VPAEVIADGI LSCYAPPHNV 540 GQVPFYVTCS NRVACSEVRE FDYRAGVTKD INVFDIYGLT SREMLLRLKT LLSLKSFSPC 600 NHHCQGVVEK RELIAKIISM KEEEECHQFV DPSSDQDLSE YEEKERLLQR LMKEKLYSWL 660 LHKIVEDGKG PNIVDEKGQG VLHLAAALGY DWAINPTVSA GVSINFRDVN GWTALHWAAF 720 CGRERTVAIL VSVGAAPGAL TDPSPEFPLG RTPADLASAN GHKGISGFLA ESSLTSYLSS 780 LTMDDQKEAV QTVSDRIATS VNYMMVCLAN MLFHF* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN558810 | 2e-77 | JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016691773.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 2-like isoform X4 | ||||
Swissprot | Q6NPP4 | 0.0 | CMTA2_ARATH; Calmodulin-binding transcription activator 2 | ||||
TrEMBL | A0A0D2RJS3 | 0.0 | A0A0D2RJS3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G220600.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G220600.5 |
Publications ? help Back to Top | |||
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