PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G220600.5

Common Name

B456_005G220600

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CAMTA

Protein Properties

Length: 816aa MW: 90953.9 Da PI: 4.9766

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G220600.5	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	184.5	1.2e-57	20	136	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 l+ ++rwl++ ei++iL n++k+++++e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+een+ Gorai.005G220600.5 20 LEAQHRWLRPAEICEILRNYQKFHISSEPPTGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENE 110 5679************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 +fqrr+yw+Le++l++iv+vhylevk Gorai.005G220600.5 111 NFQRRSYWMLEQDLTHIVFVHYLEVK 136 *********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	82.804	15	141	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	8.0E-82	18	136	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.7E-51	21	135	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.0E-6	465	564	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	8.54E-17	478	564	IPR014756	Immunoglobulin E-set
Pfam	PF01833	5.7E-6	478	551	IPR002909	IPT domain
CDD	cd00204	2.84E-15	660	769	No hit	No description
PROSITE profile	PS50297	19.014	660	771	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.49E-18	663	771	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.0E-19	663	773	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.6E-6	682	771	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	9.458	710	742	IPR002110	Ankyrin repeat
SMART	SM00248	0.019	710	739	IPR002110	Ankyrin repeat
SMART	SM00248	1800	749	778	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 816 aa Download sequence Send to blast
MADQASYSLA PRLDIDHILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF 60 DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML 120 EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSASPTSTL 180 TSLCEDADSD SHQASSRFCT LPQQGNASVM DKIDSGFLNH FSPHQYPGWS SIPGVNEVSH 240 LHGDRPRDID YGTCMTEARK TPDLPSWEQD LGQYLPVCAA ASSHTSATST QPDTMSISLQ 300 QQNMMKGKLL TVKSASAEFG NPLSTESNWQ IPSADNALEL PKWLMDSSSN FELPYDTRFF 360 EQKTHDFQLP NALEEITSHD VLKDDDSDSV TKTYPENDIY LDGNVNYAFS LKKSLLNGEE 420 NLKKVDSFSR WITKELGEVD DLQMQSSSGL AWSTVECGNV SDDASLSPSL SQDQLFSIVD 480 FSPKWAYIDL ETEVLIIGTF LKSQEEVAKY NWSCMFGEVE VPAEVIADGI LSCYAPPHNV 540 GQVPFYVTCS NRVACSEVRE FDYRAGVTKD INVFDIYGLT SREMLLRLKT LLSLKSFSPC 600 NHHCQGVVEK RELIAKIISM KEEEECHQFV DPSSDQDLSE YEEKERLLQR LMKEKLYSWL 660 LHKIVEDGKG PNIVDEKGQG VLHLAAALGY DWAINPTVSA GVSINFRDVN GWTALHWAAF 720 CGRERTVAIL VSVGAAPGAL TDPSPEFPLG RTPADLASAN GHKGISGFLA ESSLTSYLSS 780 LTMDDQKEAV QTVSDRIATS VNYMMVCLAN MLFHF*

Sequence ? help Back to Top

Protein Sequence Length: 816 aa Download sequence Send to blast

MADQASYSLA PRLDIDHILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSASPTSTL  180
TSLCEDADSD SHQASSRFCT LPQQGNASVM DKIDSGFLNH FSPHQYPGWS SIPGVNEVSH  240
LHGDRPRDID YGTCMTEARK TPDLPSWEQD LGQYLPVCAA ASSHTSATST QPDTMSISLQ  300
QQNMMKGKLL TVKSASAEFG NPLSTESNWQ IPSADNALEL PKWLMDSSSN FELPYDTRFF  360
EQKTHDFQLP NALEEITSHD VLKDDDSDSV TKTYPENDIY LDGNVNYAFS LKKSLLNGEE  420
NLKKVDSFSR WITKELGEVD DLQMQSSSGL AWSTVECGNV SDDASLSPSL SQDQLFSIVD  480
FSPKWAYIDL ETEVLIIGTF LKSQEEVAKY NWSCMFGEVE VPAEVIADGI LSCYAPPHNV  540
GQVPFYVTCS NRVACSEVRE FDYRAGVTKD INVFDIYGLT SREMLLRLKT LLSLKSFSPC  600
NHHCQGVVEK RELIAKIISM KEEEECHQFV DPSSDQDLSE YEEKERLLQR LMKEKLYSWL  660
LHKIVEDGKG PNIVDEKGQG VLHLAAALGY DWAINPTVSA GVSINFRDVN GWTALHWAAF  720
CGRERTVAIL VSVGAAPGAL TDPSPEFPLG RTPADLASAN GHKGISGFLA ESSLTSYLSS  780
LTMDDQKEAV QTVSDRIATS VNYMMVCLAN MLFHF*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:14581622}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN558810	2e-77	JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016691773.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like isoform X4
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0D2RJS3	0.0	A0A0D2RJS3_GOSRA; Uncharacterized protein
STRING	Gorai.005G220600.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Gorai.005G220600.5

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]