PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G220600.1
Common NameB456_005G220600, LOC105795074
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family CAMTA
Protein Properties Length: 1053aa    MW: 118319 Da    PI: 5.9112
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G220600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11841.7e-57201362118
                CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                         l+ ++rwl++ ei++iL n++k+++++e++t p+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+++vl+cyYah+een+
  Gorai.005G220600.1  20 LEAQHRWLRPAEICEILRNYQKFHISSEPPTGPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSIDVLHCYYAHGEENE 110
                         5679*************************************************************************************** PP

                CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                         +fqrr+yw+Le++l++iv+vhylevk
  Gorai.005G220600.1 111 NFQRRSYWMLEQDLTHIVFVHYLEVK 136
                         ***********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143782.80415141IPR005559CG-1 DNA-binding domain
SMARTSM010768.0E-8218136IPR005559CG-1 DNA-binding domain
PfamPF038596.7E-5121135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.101.5E-6470568IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.19E-16482568IPR014756Immunoglobulin E-set
PfamPF018337.9E-6482555IPR002909IPT domain
CDDcd002044.18E-15664773No hitNo description
PROSITE profilePS5029719.014664775IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.26E-18665775IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.9E-19667777IPR020683Ankyrin repeat-containing domain
PfamPF127964.0E-6686775IPR020683Ankyrin repeat-containing domain
SMARTSM002480.019714743IPR002110Ankyrin repeat
PROSITE profilePS500889.458714746IPR002110Ankyrin repeat
SMARTSM002481800753782IPR002110Ankyrin repeat
SuperFamilySSF525402.52E-8874927IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.37876898IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.133877906IPR000048IQ motif, EF-hand binding site
PfamPF006120.0017878897IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0014899921IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.432900924IPR000048IQ motif, EF-hand binding site
PfamPF006128.6E-5901921IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1053 aa     Download sequence    Send to blast
MADQASYSLA PRLDIDHILL EAQHRWLRPA EICEILRNYQ KFHISSEPPT GPPSGSLFLF  60
DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSIDVLH CYYAHGEENE NFQRRSYWML  120
EQDLTHIVFV HYLEVKGRTI GGISHVSNSQ TSSPSTSSYP DSHTKAPSGN ADSASPTSTL  180
TSLCEDADSE DSHQASSRFC TLPQQGNASV MDKIDSGFLN HFSPHQYPDH KGWSSIPGVN  240
EVSHLHGDRP RDIDYGTCMT EARKTPDLPS WEQDLGQYLP VCAAASSHTS ATSTQPDTMS  300
ISLQQQNMMK GKLLTVKSAS AEFGNPLSTE SNWQIPSADN ALELPKWLMD SSSNFELPYD  360
TRFFEQKTHD FQLPNALEEI TSHDVLKDDD SDSVTKTYPE NDIYLDGNVN YAFSLKKSLL  420
NGEENLKKVD SFSRWITKEL GEVDDLQMQS SSGLAWSTVE CGNVSDDASL SPSLSQDQLF  480
SIVDFSPKWA YIDLETEVLI IGTFLKSQEE VAKYNWSCMF GEVEVPAEVI ADGILSCYAP  540
PHNVGQVPFY VTCSNRVACS EVREFDYRAG VTKDINVFDI YGLTSREMLL RLKTLLSLKS  600
FSPCNHHCQG VVEKRELIAK IISMKEEEEC HQFVDPSSDQ DLSEYEEKER LLQRLMKEKL  660
YSWLLHKIVE DGKGPNIVDE KGQGVLHLAA ALGYDWAINP TVSAGVSINF RDVNGWTALH  720
WAAFCGRERT VAILVSVGAA PGALTDPSPE FPLGRTPADL ASANGHKGIS GFLAESSLTS  780
YLSSLTMDDQ KEAVQTVSDR IATSVNYSDA QDILSLKDSI TAVCNATQAA DRIHQMFRMQ  840
SFQRKQLRES SDGVSGEHVI SLLTTKTRRP FQSDGVAHAA ATQIQKKFRG WKKRKEFLLI  900
RKRIVKIQAH VRGHQVRKQY KTFVWSVGIL EKVILRWRRK GSGLRGFRRD AIIKPDPQCT  960
LPEEDEYDFL KEGRKQTEER FQKALTRVKS MAQNPEGRGQ YRRLLTLVQG IQENKACNMV  1020
LNSTEEVAVA DEDFLDVDSL LDDDTFMSIA FE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN5588102e-77JN558810.1 Solanum lycopersicum calmodulin-binding transcription factor SR1L mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479994.10.0PREDICTED: calmodulin-binding transcription activator 2-like isoform X3
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0D2SLP80.0A0A0D2SLP8_GOSRA; Uncharacterized protein
STRINGGorai.005G220600.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40822452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  3. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]