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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G218900.1 | ||||||||
Common Name | B456_005G218900, LOC105796222 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 272aa MW: 30816.1 Da PI: 6.5012 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.1 | 7.3e-09 | 154 | 197 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ r RR++i ++ +eL +l+P +K++ ae+L+ A +Y+k+Lq Gorai.005G218900.1 154 IAARERRRKITKKTQELGKLVPGG-----TKMNTAEMLQAAFKYVKYLQ 197 56799*****************87.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 5.99E-10 | 145 | 200 | No hit | No description |
SuperFamily | SSF47459 | 9.95E-12 | 146 | 208 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 12.455 | 147 | 196 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-10 | 153 | 203 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.5E-10 | 153 | 202 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-6 | 155 | 197 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MVLSSYYSNC ETDVQNLNSE PTHQITKAVQ ADDHHEQQQQ HLQYYCDPPF ELPLTFLDPC 60 IDLNNNFLHP ENYYSAPLLP YDPLITPYDN FSSYPCPKRH KLIEDHCLMP GFFDGVALNS 120 CPQSMNGVYS LEGTHTVGNC KKISDEKCVS VQSIAARERR RKITKKTQEL GKLVPGGTKM 180 NTAEMLQAAF KYVKYLQAQL GILQLMNSFP ENKEGNRKDK ESMQIVTSSK VQEKLYIEEK 240 CLVPKDFVLS LTTLSRPPLS DELTRLLSSS P* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012481250.1 | 0.0 | PREDICTED: transcription factor bHLH52-like | ||||
Refseq | XP_016690549.1 | 0.0 | PREDICTED: transcription factor bHLH52-like | ||||
TrEMBL | A0A0D2RJQ8 | 0.0 | A0A0D2RJQ8_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8JQE9 | 0.0 | A0A1U8JQE9_GOSHI; transcription factor bHLH52-like | ||||
STRING | Gorai.005G218900.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16954 | 4 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30670.1 | 7e-26 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G218900.1 |
Entrez Gene | 105796222 |
Publications ? help Back to Top | |||
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