PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G217400.1
Common NameB456_005G217400, LOC105795044
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family NAC
Protein Properties Length: 196aa    MW: 22444.9 Da    PI: 4.7295
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G217400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM122.63.4e-3891291128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                         lppGfrF Ptdeelvv++L++k++  +++  +vi+++d+y ++Pw+L+ k+ +e ++wy++s+r         +nr t++gyWk  g d++
  Gorai.005G217400.1   9 LPPGFRFYPTDEELVVHFLQRKAALLPCHP-DVIPDLDLYPYDPWELDGKALGEGNQWYYYSRRT--------QNRNTSKGYWKPMGIDEP 90 
                         79*************************999.99**************977778899******984........58999************* PP

                 NAM  92 vlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                         v+++ ++++vg+kk +vfy g + p g+kt+W+m+eyrl
  Gorai.005G217400.1  91 VVNSnSSKKVGMKKYFVFYIGeSGPAGVKTNWIMQEYRL 129
                         *99867888**********87588*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-487162IPR003441NAC domain
PROSITE profilePS5100547.1259163IPR003441NAC domain
PfamPF023652.4E-2310129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGDNRNVNLP PGFRFYPTDE ELVVHFLQRK AALLPCHPDV IPDLDLYPYD PWELDGKALG  60
EGNQWYYYSR RTQNRNTSKG YWKPMGIDEP VVNSNSSKKV GMKKYFVFYI GESGPAGVKT  120
NWIMQEYRLS DSDSSSSSRS SKRRGGHSKI DYSKWVVCRV YERNCSEEED DGTELSCLDE  180
VFLSLDDLDE ISLPD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-41616917174NAC domain-containing protein 19
3swm_B2e-41616917174NAC domain-containing protein 19
3swm_C2e-41616917174NAC domain-containing protein 19
3swm_D2e-41616917174NAC domain-containing protein 19
3swp_A2e-41616917174NAC domain-containing protein 19
3swp_B2e-41616917174NAC domain-containing protein 19
3swp_C2e-41616917174NAC domain-containing protein 19
3swp_D2e-41616917174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC8472380.0KC847238.1 Gossypium hirsutum NAC domain protein NAC61 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012479949.11e-144PREDICTED: NAC transcription factor NAM-B2-like
SwissprotQ8GWK64e-91NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0D2RJJ01e-142A0A0D2RJJ0_GOSRA; Uncharacterized protein
TrEMBLW6JF101e-142W6JF10_GOSHI; NAC domain protein NAC61
STRINGGorai.005G217400.11e-143(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36742862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-90xylem NAC domain 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  2. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  3. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]