PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

TCP

Protein Properties

Length: 258aa MW: 26592.8 Da PI: 10.1465

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G211900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.4	1.2e-38	29	114	2	88
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++ns+s Gorai.005G211900.1 29 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGANSTSL 114 78**************************************************************99999777.33333333322222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-33	35	119	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.287	35	89	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSNSETAATN GSLMDPQRHQ APAANGSLAV KKPPTKDRHS KVDGRGRRIR MPIICAARVF 60 QLTRELGHKS DGQTIEWLLR QAEPSIIAAT GTGTTPASFS TVSVSLRGAN STSLSSTTSS 120 SLDHKPLLGP TPFILGKRVR SDDDNAGKDD SGGLTVGPGV GSIVGPNGTH PGGFWALPAR 180 PDFGQLWSFA APPPPDMVVQ AAAQQPAAAA ALFVQQQQAM GEASAARVGN YLPGHLNLLA 240 SLSGAPGGSG RRDEDPH*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479842.1	0.0	PREDICTED: transcription factor TCP21
Refseq	XP_012479843.1	0.0	PREDICTED: transcription factor TCP21
Refseq	XP_012479844.1	0.0	PREDICTED: transcription factor TCP21
Swissprot	Q9FMX2	3e-95	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A0D2SKJ2	0.0	A0A0D2SKJ2_GOSRA; Uncharacterized protein
STRING	Gorai.005G211900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	2e-68	TCP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G211900.1
Entrez Gene	105794977

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]