PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G208800.1

Common Name

B456_005G208800

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

M-type_MADS

Protein Properties

Length: 156aa MW: 18014.1 Da PI: 10.4927

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G208800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.9	7.2e-20	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 kri+n rq+ +skR +gilKKA ELS+L +a+va+++fs+tg+l y Gorai.005G208800.1 9 KRIDNPCSRQIAYSKRGKGILKKATELSTLYGADVALLMFSPTGRLTSYT 58 79********************************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	2.7E-23	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	22.343	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.19E-20	2	68	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	7.8E-19	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-16	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MGRKRLLIKR IDNPCSRQIA YSKRGKGILK KATELSTLYG ADVALLMFSP TGRLTSYTHK 60 GRVSQIVKLT VWSLSVFLLY FRHLDNEEAL ERKPCELNRK KYEAQEKMWS YSPDVSNIYL 120 IAEAQHHQQF VTKAIQRIEK LKKTKLLEKE TSPSL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016667492.1	5e-72	PREDICTED: agamous-like MADS-box protein AGL104
TrEMBL	A0A0D2NG68	1e-111	A0A0D2NG68_GOSRA; Uncharacterized protein
STRING	Gorai.005G208800.1	1e-111	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16598	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77980.1	1e-17	AGAMOUS-like 66

Link Out ? help Back to Top
Phytozome	Gorai.005G208800.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]