PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G208700.1

Common Name

B456_005G208700, LOC105794944

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 322aa MW: 36488 Da PI: 6.7769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G208700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.7	8.5e-08	170	215	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+e r+RR++ ++ L++l+P++ kK++ a++L++A +YI+ Lq Gorai.005G208700.1 170 HSELARKRRQKRSDKTRCLQKLMPWD-----KKMDMATMLQEAYKYIRFLQ 215 89999******************9.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.919	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	167	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-5	170	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-10	170	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-7	170	219	No hit	No description
SMART	SM00353	4.9E-6	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MKMEEYDFCS TLHPLHSYAP SPFTSSVHNP EFNNMMINSH EPKLFNDPNL RSLFPLPYEP 60 DGPCCFFTPD PDPDPIFPSL PLPDLDFSLF SSDIPDPASH PLLNLPSPPL FLSDLRPLHR 120 LPPLSASSTP KSKRTRLDLV LSHSDNNPQT LDSIVKSFNA PPPPPPIIPH SELARKRRQK 180 RSDKTRCLQK LMPWDKKMDM ATMLQEAYKY IRFLQAQVSI LQSMPITSSF VSITQHLNNA 240 SFEVDFAGLE RLNRQQLLQV LINSPMAQTM LCSQGLCVFA TEQLVSLNKA KERKTMLQQF 300 LFGRESDRLS DIAFVCACDE Y*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479802.1	0.0	PREDICTED: transcription factor bHLH117
TrEMBL	A0A0D2RQD6	0.0	A0A0D2RQD6_GOSRA; Uncharacterized protein
STRING	Gorai.005G208700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13399	22	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22100.1	1e-28	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G208700.1
Entrez Gene	105794944

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]