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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.005G206300.1 |
| Common Name | B456_005G206300, LOC105794915 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
MYB |
| Protein Properties |
Length: 404aa MW: 44975 Da PI: 7.4246 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.005G206300.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 55.5 | 1.3e-17 | 75 | 122 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l ++++ +G+g+W+t ++ g+ R++k+c++rw +yl
Gorai.005G206300.1 75 KGPWTPEEDLKLTNYIQVHGPGNWRTLPKNAGLQRCGKSCRLRWTNYL 122
79********************************************97 PP
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| 2 | Myb_DNA-binding | 50.6 | 4.4e-16 | 128 | 172 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rgr++ eE+e +++++ lG++ W++Ia ++ gRt++++k++w+++
Gorai.005G206300.1 128 RGRFSFEEEETIIQLHGILGNK-WSAIAGQLP-GRTDNEIKNYWNTH 172
89********************.*********.************97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 404 aa
Download sequence Send
to blast |
MVPILFPTLY IYICVEVYDS FRIDELHINF SLFSVKRSPL SLTPSRKLQH TSKLNLSKGK 60
PMGRTPCCDK SGLKKGPWTP EEDLKLTNYI QVHGPGNWRT LPKNAGLQRC GKSCRLRWTN 120
YLRPDIRRGR FSFEEEETII QLHGILGNKW SAIAGQLPGR TDNEIKNYWN THIRKRLLRN 180
GIDPVTHAPR LDLLDLSSII SSTLCNQSLL NVSNLLGTQA LLNPQLLSLA NTLLSLKQEN 240
PEMLMQYLHQ NQLNLDPSLQ APIQIASACT TTSTVPCCTS MLSQTGLIQA TGEGFFSSDM 300
TNFSYPNSQE NLTNSTLTNE FAAQPHYVQC STNPTVPILS ETSKFQSVDG SFDSVRSSAI 360
SSPTALNSSS TFVNSSSTDD ERESFSSLLK FEIPEGLDIN DFM*
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gv2_A | 1e-29 | 73 | 177 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
| 1h8a_C | 1e-29 | 73 | 177 | 25 | 128 | MYB TRANSFORMING PROTEIN |
| 1mse_C | 9e-30 | 73 | 177 | 2 | 105 | C-Myb DNA-Binding Domain |
| 1msf_C | 9e-30 | 73 | 177 | 2 | 105 | C-Myb DNA-Binding Domain |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in rosette leaves, cauline leaves and flowers. {ECO:0000269|PubMed:8980549}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | JX577924 | 1e-95 | JX577924.1 Gossypium hirsutum clone NBRI_GE9843 microsatellite sequence. |
| Publications
? help Back to Top |
- Duarte JM, et al.
Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
Mol. Biol. Evol., 2006. 23(2): p. 469-78
[PMID:16280546] - Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Huang KC,Lin WC,Cheng WH
Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
BMC Plant Biol., 2018. 18(1): p. 40
[PMID:29490615] - Zhu L,Guo J,Ma Z,Wang J,Zhou C
Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
Biomolecules, 2019.
[PMID:29880735]
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