PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G198500.3

Common Name

B456_005G198500, LOC105794834

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

VOZ

Protein Properties

Length: 452aa MW: 50381.4 Da PI: 5.0553

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G198500.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	440.1	2.9e-135	200	416	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwn 91 pppsaf+gpkcalwdctrpaqgs+w+qdycssfhatlalne++pgttp+lrp+gi+lkd+ll++a++ak+qgk+vgip+cegaat+kspwn Gorai.005G198500.3 200 PPPSAFMGPKCALWDCTRPAQGSDWFQDYCSSFHATLALNEDPPGTTPILRPGGISLKDNLLLDAVRAKAQGKNVGIPQCEGAATMKSPWN 290 89*************************************************************************************** PP VOZ 92 aaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalal 182 a+elfdlsllege irewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkef+g+krsyymdpqps+++ewhl+eyei+ +da+al Gorai.005G198500.3 291 ATELFDLSLLEGEIIREWLFFDKPRRAFESGNRKQRSLPDYSGRGWHESRKQVMKEFAGQKRSYYMDPQPSGKYEWHLFEYEIYGCDAFAL 381 *************************************************************************************** PP VOZ 183 yrlelklvdekksakgkvskdsladlqkklgrlta 217 yrlelkl+++kks+k+kv kdsladlqkk+grlta Gorai.005G198500.3 382 YRLELKLANQKKSPKAKVPKDSLADLQKKMGRLTA 416 *******************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 452 aa Download sequence Send to blast
MQNNSSKNKC SSASHQQMVD NAKNRLNFLQ DQFTDLQAAR KEGRAGDVAV LEEQVYQNLR 60 EWKAELCTPS PASSLLGSLG SFSDDINRLL QLYEEEDDAT SPLKEPAVLK PEIDDQSLNP 120 STLPVIPEDY FVTHEPQEQS FQGFDLCKVS TSANADINYQ LDYHPFDLQQ DFDHEHLLDA 180 NGTEDYVKDA NSNMLPNISP PPSAFMGPKC ALWDCTRPAQ GSDWFQDYCS SFHATLALNE 240 DPPGTTPILR PGGISLKDNL LLDAVRAKAQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL 300 EGEIIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFAGQ KRSYYMDPQP 360 SGKYEWHLFE YEIYGCDAFA LYRLELKLAN QKKSPKAKVP KDSLADLQKK MGRLTAEVPG 420 DDKPPGKGKT KANKKAAMAA AAAANVNSAQ D*

Sequence ? help Back to Top

Protein Sequence Length: 452 aa Download sequence Send to blast

MQNNSSKNKC SSASHQQMVD NAKNRLNFLQ DQFTDLQAAR KEGRAGDVAV LEEQVYQNLR  60
EWKAELCTPS PASSLLGSLG SFSDDINRLL QLYEEEDDAT SPLKEPAVLK PEIDDQSLNP  120
STLPVIPEDY FVTHEPQEQS FQGFDLCKVS TSANADINYQ LDYHPFDLQQ DFDHEHLLDA  180
NGTEDYVKDA NSNMLPNISP PPSAFMGPKC ALWDCTRPAQ GSDWFQDYCS SFHATLALNE  240
DPPGTTPILR PGGISLKDNL LLDAVRAKAQ GKNVGIPQCE GAATMKSPWN ATELFDLSLL  300
EGEIIREWLF FDKPRRAFES GNRKQRSLPD YSGRGWHESR KQVMKEFAGQ KRSYYMDPQP  360
SGKYEWHLFE YEIYGCDAFA LYRLELKLAN QKKSPKAKVP KDSLADLQKK MGRLTAEVPG  420
DDKPPGKGKT KANKKAAMAA AAAANVNSAQ D*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC166092	9e-35	AC166092.4 Glycine max cultivar Williams 82 clone gmw1-93l19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479644.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X2
Refseq	XP_012479645.1	0.0	PREDICTED: transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	1e-177	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A0D2SKF6	0.0	A0A0D2SKF6_GOSRA; Uncharacterized protein
STRING	Gorai.005G198500.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-165	vascular plant one zinc finger protein

Link Out ? help Back to Top
Phytozome	Gorai.005G198500.3
Entrez Gene	105794834

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]