PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

ERF

Protein Properties

Length: 273aa MW: 30133.9 Da PI: 4.6858

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G197800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60.1	5.1e-19	36	84	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Gorai.005G197800.1 36 FLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDRAARSMRG 84 67****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.60E-30	34	91	No hit	No description
PROSITE profile	PS51032	20.336	35	92	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-33	35	98	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.5E-20	36	93	IPR016177	DNA-binding domain
PRINTS	PR00367	3.4E-8	36	47	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-28	36	92	IPR001471	AP2/ERF domain
Pfam	PF00847	5.5E-12	38	84	IPR001471	AP2/ERF domain
PRINTS	PR00367	3.4E-8	58	74	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MDFNNSKINS PSSSKNKRKQ QQKQPQQQQQ QQEARFLGVR RRPWGRYAAE IRDPSTKERH 60 WLGTFDTAEE AALAYDRAAR SMRGSKVRTN FVYSDMPVGS SVTSIISPDE SQHDMSSIFP 120 IHPPFHQQTD ANQNQLFFTQ DPFNACHFSS GWNQESSDTL VSYTPITGVM DAAGNGGSQQ 180 FSDDCELPPL PPDVSSTCYG SGVDMSYTYG SWSDTGLLGS ADGFDSGVSQ PFFDFNSYEL 240 MQHTPVFGKI PSVPDTVAEG FDLGSSSSGY FF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	2e-19	36	91	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012481246.1	0.0	PREDICTED: ethylene-responsive transcription factor LEP
Swissprot	Q9FZ90	2e-49	ERF87_ARATH; Ethylene-responsive transcription factor ERF087
TrEMBL	A0A0D2RIH9	0.0	A0A0D2RIH9_GOSRA; Uncharacterized protein
STRING	Gorai.005G197800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28160.1	6e-39	ERF family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G197800.1
Entrez Gene	105796214

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]