PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 269aa MW: 30456.8 Da PI: 4.5967

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G189800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	43	96	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++t++q+e Le+ Fe ++++ +++ +LAk+lgL+ rqV +WFqNrRa+ k+ Gorai.005G189800.1 43 KRRLTATQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKN 96 5689***********************************************995 PP
2	HD-ZIP_I/II	120.9	6.5e-39	42	131	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kkrrl++ qv++LE+sFe e+kLe++rK +la+eLglqprqva+WFqnrRAR k+kqlEkdy++L++++d+lk++ ++L ke+++L++++ Gorai.005G189800.1 42 KKRRLTATQVEFLERSFEVENKLESDRKLRLAKELGLQPRQVAIWFQNRRARSKNKQLEKDYDSLRATFDKLKADFDNLLKEKDDLKNQV 131 9**************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.98E-19	29	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.876	37	97	IPR001356	Homeobox domain
SMART	SM00389	3.0E-17	40	101	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-15	42	95	IPR001356	Homeobox domain
CDD	cd00086	2.77E-17	42	98	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-18	44	104	IPR009057	Homeodomain-like
PRINTS	PR00031	1.3E-5	68	77	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	72	95	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.3E-5	77	93	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.6E-15	97	138	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MEPLWTPSSS SSALQGEKPV MEYEYVNGGD DLDGSCQPAG VKKRRLTATQ VEFLERSFEV 60 ENKLESDRKL RLAKELGLQP RQVAIWFQNR RARSKNKQLE KDYDSLRATF DKLKADFDNL 120 LKEKDDLKNQ VLALKEKLLI KEKGMENLGS FEAIHSSNDE PQKPNPDASH VPLLACKQEE 180 ACSAKSDVFD SDSPHYTDGH GYHSSFIEPT DSSNVFEPDQ SDEEDDLSKS LLHPPLFFPK 240 FDCYYDAPAT SCNFSLPVED QSFWSSLY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	89	97	RRARSKNKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479493.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT5-like isoform X1
TrEMBL	A0A0D2SJP8	0.0	A0A0D2SJP8_GOSRA; Uncharacterized protein
STRING	Gorai.005G189800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM545	28	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	1e-37	homeobox 1

Link Out ? help Back to Top
Phytozome	Gorai.005G189800.1
Entrez Gene	105794737

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]