PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G186400.1

Common Name

B456_005G186400, LOC105794699

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 240aa MW: 26499.3 Da PI: 6.5049

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G186400.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.3	0.00026	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H Gorai.005G186400.1 74 FECQYCFKEFANSQALGGHQNAH 96 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.92E-6	70	101	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-5	70	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.406	74	101	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009736	Biological Process	cytokinin-activated signaling pathway
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010026	Biological Process	trichome differentiation
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MEKDACDCEN GYSQAGFSVE KKLRLFGFEL NPSNSNGDSM KVCGEGDESV NSSNTISSTA 60 KEKSSMAEAD DKKFECQYCF KEFANSQALG GHQNAHKKER MKKKRLQLQA KRASLNCYLQ 120 PFQNSLGFGS PWYYDSPAYA TADFTPYEES QISFSQFEQD SHFNGSHASN LNSLPSEMIP 180 FQRDSSMFTL IQGDRSRDNR PLFKPSSSTP TKQSCKTLDL QLGLGLQQST IQSSSGGGI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM434063	0.0	KM434063.1 Gossypium hirsutum C2H2 zinc finger protein 5 (ZFP5) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012479446.1	1e-178	PREDICTED: zinc finger protein 5-like
TrEMBL	A0A0D2RHM9	1e-177	A0A0D2RHM9_GOSRA; Uncharacterized protein
STRING	Gorai.005G186400.1	1e-177	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7325	25	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	6e-18	zinc finger protein 5

Link Out ? help Back to Top
Phytozome	Gorai.005G186400.1
Entrez Gene	105794699

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]