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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.005G164600.1 |
Common Name | B456_005G164600, LOC105794471 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
SBP |
Protein Properties |
Length: 310aa MW: 33477.4 Da PI: 10.3504 |
Description |
SBP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.005G164600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SBP | 132.6 | 1.3e-41 | 25 | 101 | 2 | 78 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
C v+gC+adls++++yhrrhkvCevhsk+p+v ++g+eqrfCqqCsrfh+l efDe+krsCr+rL++hn+rrrk+q+
Gorai.005G164600.1 25 CLVDGCTADLSKCRDYHRRHKVCEVHSKTPKVSIRGQEQRFCQQCSRFHSLVEFDEGKRSCRKRLDGHNRRRRKPQP 101
**************************************************************************986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 310 aa
Download sequence Send
to blast |
MESAPSSASF KRARPPGSGN QVPSCLVDGC TADLSKCRDY HRRHKVCEVH SKTPKVSIRG 60 QEQRFCQQCS RFHSLVEFDE GKRSCRKRLD GHNRRRRKPQ PNALTVNSGS LLSNPPGSRY 120 LLFSSPQIFS TTSMTDSSTG AVKVKTDISS SLNFSSRNSS FVGASSLNYK GERQFSFLQS 180 ANSSHPGVSV CQPLVNGNPS SSNGGISQKM LLNGLNRTVE SNRALSLLSS QPAETREISL 240 SPMVQSGSTS SLIPNLQYKG LGMEGEQVGT ILATDQITNT DLHGNGVFRI GHPGSSASGT 300 HHRLTFSWE*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 81 | 98 | KRSCRKRLDGHNRRRRKP |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Strongly expressed in immature ears and weakly in husks. Found in the inflorescence meristem of the developing ear, in the spikelet pair primordia, the glume primordia, the cupule forming region and other floral organs. Not detected in other tissues. {ECO:0000250|UniProtKB:Q49I55}. |
Functional Description ? help
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Source |
Description |
UniProt | SBP transcriptional regulator probably involved in the domestication of maize. Acts as a transcriptional repressor binding to a 5'-GTAC-3' motif. May repress the growth of lateral branches in length and numbers. {ECO:0000250|UniProtKB:Q49I55}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KJ622329 | 0.0 | KJ622329.1 Gossypium hirsutum SQUAMOSA promoter binding-like transcription factor (SPL21) mRNA, complete cds. |