 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.005G154200.1 |
| Common Name | B456_005G154200, LOC105794336 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 281aa MW: 31492.1 Da PI: 9.8717 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.005G154200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 315.8 | 1.4e-96 | 1 | 280 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkalaernkalver 77
md+d+ + rn+gyyep+ +k +lgl+lm aerd+k+ r+ n l+ + +a+++rd m++ rd+++++
Gorai.005G154200.1 1 MDEDALNMRNWGYYEPS--FKGHLGLHLM---AERDKKPfipgRDPNN-LMVTTNAFHPRDcivseappirMQY-VRDTWISQ-------- 76
99**9999*******99..******9998...5899999999999998.899999*******************.9*******........ PP
GAGA_bind 78 dnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
++kl+++l+ + ++++++l++t+ ++s+ ++++ + ++ ++ +e+++ +ke ++kkrq + +pk++kakk++
Gorai.005G154200.1 77 REKLFNMLPPVT------APNYDILPETSATHSMPI-----WQPPPPPDASTRDESVIGRVEEPPASKEGVQSKKRQVGGDPKTPKAKKPR 156
789999999666......47899*********9999.....5566655444444445555567888999999999**************99 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
k +k+++ ++++k kks+d+++ng ++D+s++ +PvCsCtG+ +qCY+WG+GGWqSaCCtt++S+yPLP+stkrrgaRiagrK
Gorai.005G154200.1 157 K----PKDNT-----NSSVKPAKKSMDITINGYDMDISSISIPVCSCTGTAQQCYRWGCGGWQSACCTTNVSMYPLPMSTKRRGARIAGRK 238
9....22222.....23578999******************************************************************** PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mSqgafkk+LekLaae yd+snp+DL++hWA+HGtnkfv ir
Gorai.005G154200.1 239 MSQGAFKKVLEKLAAENYDFSNPIDLRTHWARHGTNKFVIIR 280
****************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MDEDALNMRN WGYYEPSFKG HLGLHLMAER DKKPFIPGRD PNNLMVTTNA FHPRDCIVSE 60
APPIRMQYVR DTWISQREKL FNMLPPVTAP NYDILPETSA THSMPIWQPP PPPDASTRDE 120
SVIGRVEEPP ASKEGVQSKK RQVGGDPKTP KAKKPRKPKD NTNSSVKPAK KSMDITINGY 180
DMDISSISIP VCSCTGTAQQ CYRWGCGGWQ SACCTTNVSM YPLPMSTKRR GARIAGRKMS 240
QGAFKKVLEK LAAENYDFSN PIDLRTHWAR HGTNKFVIIR *
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | JX964440 | 1e-119 | JX964440.1 Gossypium hirsutum clone NBRI_TRANS-709 microsatellite sequence. |
