PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G148300.3
Common NameB456_005G148300, LOC105794272
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 531aa    MW: 56987 Da    PI: 7.3053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G148300.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.5e-09367415355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    sk   Ka +L + ++Y++sLq
  Gorai.005G148300.3 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415
                         58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.67E-17362433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.96E-11362419No hitNo description
PROSITE profilePS5088815.485364414IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16365431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-6367415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-10370420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MDIGEKDKYE LGKRDEHNNI NYQAPVLSSD WQFGGANLTS AGMSLVPTTN PLAIGSSCAS  60
ASLVDSFGSS LWEHPSNSQN MGFCDFSVQN GANSSNAMEV GKGLPNSLRS SIDRPFDMGW  120
NAASAMLKGG IFLPNTTGIL AQSLSQLPAD SAFIERAARF SSFNGGNFSD MVNPFGVPEP  180
MGLYARGVGL MQGPDDIFAV NGMKSVSVME SQKSKLDATE ATRDAGLRVE NRAKASPLEN  240
ERKSESLMQP NEEAKQGTGG SGNESDEAEI SSRDGGQDEP SALDGTGGEP SAKGLSSKKR  300
KKSIQDAEID RAKGGQTSTK TAKDSPENQQ KQSMMINKTT GKQGSPASHP PKEEYIHVRA  360
RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF  420
LSMKLATVNP RLDFSIEALL AKDIIQSRAG PSSTLGFSPD LSMGYPPLHP SQPGLVQAPL  480
PVIGNSSDVI HKALSSQLTS MTGGLKEPNQ VFLHFFTRMH GRMSSTMLFK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297301KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1468111e-102EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478821.10.0PREDICTED: transcription factor bHLH49-like isoform X1
RefseqXP_012478822.10.0PREDICTED: transcription factor bHLH49-like isoform X1
TrEMBLA0A0D2PTE20.0A0A0D2PTE2_GOSRA; Uncharacterized protein
STRINGGorai.005G148300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59002544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-121bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]