PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G148300.1 | ||||||||
Common Name | B456_005G148300, LOC105794272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 527aa MW: 56436.1 Da PI: 6.0864 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.3 | 6.4e-09 | 367 | 415 | 3 | 55 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq Gorai.005G148300.1 367 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 415 58*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 6.67E-17 | 362 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.92E-11 | 362 | 419 | No hit | No description |
PROSITE profile | PS50888 | 15.485 | 364 | 414 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-16 | 365 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.7E-6 | 367 | 415 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 370 | 420 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MDIGEKDKYE LGKRDEHNNI NYQAPVLSSD WQFGGANLTS AGMSLVPTTN PLAIGSSCAS 60 ASLVDSFGSS LWEHPSNSQN MGFCDFSVQN GANSSNAMEV GKGLPNSLRS SIDRPFDMGW 120 NAASAMLKGG IFLPNTTGIL AQSLSQLPAD SAFIERAARF SSFNGGNFSD MVNPFGVPEP 180 MGLYARGVGL MQGPDDIFAV NGMKSVSVME SQKSKLDATE ATRDAGLRVE NRAKASPLEN 240 ERKSESLMQP NEEAKQGTGG SGNESDEAEI SSRDGGQDEP SALDGTGGEP SAKGLSSKKR 300 KKSIQDAEID RAKGGQTSTK TAKDSPENQQ KQSMMINKTT GKQGSPASHP PKEEYIHVRA 360 RRGQATNSHS LAERVRREKI SERMKFLQDL VPGCSKVTGK AVMLDEIINY VQSLQRQVEF 420 LSMKLATVNP RLDFSIEALL AKDIIQSRAG PSSTLGFSPD LSMGYPPLHP SQPGLVQAPL 480 PVIGNSSDVI HKALSSQLTS MTGGLKEPNQ HSNAWEDELH NVVQMN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 297 | 301 | KKRKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146811 | 1e-102 | EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478823.1 | 0.0 | PREDICTED: transcription factor bHLH49-like isoform X2 | ||||
Refseq | XP_012478824.1 | 0.0 | PREDICTED: transcription factor bHLH49-like isoform X2 | ||||
TrEMBL | A0A0D2ND21 | 0.0 | A0A0D2ND21_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G148300.1 | 0.0 | (Gossypium raimondii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 1e-128 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G148300.1 |
Entrez Gene | 105794272 |
Publications ? help Back to Top | |||
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