PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G147200.1
Common NameB456_005G147200, LOC105794260
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 25043.4 Da    PI: 9.6271
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G147200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.36.4e-31959151
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                        krienk+nrqvtfskRr g++KKA+ELSvLCdaeva+i+fs++ klyeys+
  Gorai.005G147200.1  9 KRIENKINRQVTFSKRRSGLFKKAHELSVLCDAEVALIVFSHKWKLYEYST 59
                        79***********************************************96 PP
2K-box107.41.7e-35821748100
               K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                         ++e + + +++ e+++Lk+++e Lq+++Rh++GedL++LslkeLq+LeqqL++++k+iR++Kn+ll e+i+elq+kek+++e+n +L +++
  Gorai.005G147200.1  82 ATEPESQGEWSVEYNRLKAKVELLQKNHRHYMGEDLDPLSLKELQNLEQQLDTAVKHIRARKNQLLNESISELQRKEKAIKEQNAMLANQI 172
                         555666789*********************************************************************************9 PP

               K-box  99 ee 100
                         +e
  Gorai.005G147200.1 173 KE 174
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.268161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-39160IPR002100Transcription factor, MADS-box
CDDcd002658.32E-41273No hitNo description
SuperFamilySSF554553.14E-34290IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-303859IPR002100Transcription factor, MADS-box
PfamPF014869.5E-3087172IPR002487Transcription factor, K-box
PROSITE profilePS5129716.92888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FSKRRSGLFK KAHELSVLCD AEVALIVFSH KWKLYEYSTD  60
SCMEKTLERY ERHYYAERHL VATEPESQGE WSVEYNRLKA KVELLQKNHR HYMGEDLDPL  120
SLKELQNLEQ QLDTAVKHIR ARKNQLLNES ISELQRKEKA IKEQNAMLAN QIKEREKTVA  180
RQSQWGQQDN GLNTSSFVLP HQHPSLNIGG IYQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-20179176MEF2 CHIMERA
6byy_B8e-20179176MEF2 CHIMERA
6byy_C8e-20179176MEF2 CHIMERA
6byy_D8e-20179176MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC1556390.0KC155639.1 Gossypium hirsutum MADS box protein MADS44 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478798.11e-158PREDICTED: truncated transcription factor CAULIFLOWER A-like isoform X1
SwissprotQ6E6S71e-122AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0D2RLM51e-156A0A0D2RLM5_GOSRA; Uncharacterized protein
STRINGGorai.005G147200.11e-157(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-103MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]