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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Gorai.005G146700.1 |
| Common Name | B456_005G146700, LOC105796168 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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| Family |
YABBY |
| Protein Properties |
Length: 178aa MW: 19459.1 Da PI: 8.4948 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.005G146700.1 | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 143.5 | 2.2e-44 | 9 | 155 | 1 | 163 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91
+d++ +se++Cyv+CnfCnt+lav +P + l+++vtv+CGhC++l ++ + q + l ++ +l++ +++
Gorai.005G146700.1 9 MDLVPQSEHLCYVRCNFCNTVLAVGIPCKRLLETVTVKCGHCSNLSFLSTRPPLQGQ--------CLDPQTSLTLQSFCGDFR-------- 83
578899*************************************98553333322222........222223333333322222........ PP
YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
+ t+ +s + s++++ ++p++p v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa +
Gorai.005G146700.1 84 KGTQFPSPSSSTSSEPSSPKAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARY 155
2233333334667778899***************************************************76 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 178 aa
Download sequence Send
to blast |
MNLEDKVGMD LVPQSEHLCY VRCNFCNTVL AVGIPCKRLL ETVTVKCGHC SNLSFLSTRP 60
PLQGQCLDPQ TSLTLQSFCG DFRKGTQFPS PSSSTSSEPS SPKAPFVVKP PEKKHRLPSA 120
YNRFMKEEIQ RIKAANPEIP HREAFSAAAK NWARYIPNSP AASSVCGSSS NEQNDNV*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In carpels, expression starts when the gynoecial primordia becomes distinct. First expressed in the lateral region of each carpel. Later resolves into two distinct domains, epidermal and internal. In epidermal tissues, mostly localized on the outer surface, successively from the base to the tip of the gynoecium and finally confined to the valve region before disappearing during last flowering stages. In internal tissues, first confined to four discrete zones adjacent to the future placental tissue occupying the full length of the elongating cylinder, declining from the apical regions and disappearing after the ovule primordia arise. Before nectaries initiation, expression occupies a ring of receptacle cells between the stamen and sepal primordia, from where nectaries will develop. Strongly expressed in nectaries until latest flowering stages. {ECO:0000269|PubMed:10225998}. |
| Uniprot | TISSUE SPECIFICITY: Restricted to flowers, mostly in carpels and nectaries. Expressed at low levels in sepal primordia (buds), sepal receptacle and developing petal. Not detected in placental tissues, septum, stigma and ovules. {ECO:0000269|PubMed:10225998}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor required for the initiation of nectary development. Also involved in suppressing early radial growth of the gynoecium, in promoting its later elongation and in fusion of its carpels by regulating both cell division and expansion. Establishes the polar differentiation in the carpels by specifying abaxial cell fate in the ovary wall. Regulates both cell division and expansion. {ECO:0000269|PubMed:10225997, ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:10535738, ECO:0000269|PubMed:11714690, ECO:0000269|PubMed:15598802, ECO:0000269|Ref.10}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Down-regulated by SPT and by A class genes AP2 and LUG in the outer whorl. In the third whorl, B class genes AP3 and PI, and the C class gene AG act redundantly with each other and in combination with SEP1, SEP2, SEP3, SHP1 and SHP2 to activate CRC in nectaries and carpels. LFY enhances its expression. {ECO:0000269|PubMed:10225998, ECO:0000269|PubMed:15598802}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY854804 | 0.0 | AY854804.1 Gossypium hirsutum isolate 1 CRABS CLAW mRNA, partial cds. |
| Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Fourquin C,Primo A,Martínez-Fernández I,Huet-Trujillo E,Ferrándiz C
The CRC orthologue from Pisum sativum shows conserved functions in carpel morphogenesis and vascular development.
Ann. Bot., 2014. 114(7): p. 1535-44
[PMID:24989787] - Pfannebecker KC,Lange M,Rupp O,Becker A
Seed Plant-Specific Gene Lineages Involved in Carpel Development.
Mol. Biol. Evol., 2017. 34(4): p. 925-942
[PMID:28087776] - Yamaguchi N,Huang J,Xu Y,Tanoi K,Ito T
Fine-tuning of auxin homeostasis governs the transition from floral stem cell maintenance to gynoecium formation.
Nat Commun, 2017. 8(1): p. 1125
[PMID:29066759] - Yamaguchi N, et al.
Chromatin-mediated feed-forward auxin biosynthesis in floral meristem determinacy.
Nat Commun, 2018. 9(1): p. 5290
[PMID:30538233]
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