PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G142000.2
Common NameB456_005G142000, LOC105794202
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 433aa    MW: 48593 Da    PI: 6.9415
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G142000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-16121166147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Gorai.005G142000.2 121 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 166
                         899*****************************.***********996 PP
2Myb_DNA-binding57.33.6e-18173216146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Gorai.005G142000.2 173 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 216
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.201116167IPR017930Myb domain
SMARTSM007173.3E-14120169IPR001005SANT/Myb domain
SuperFamilySSF466893.33E-28121214IPR009057Homeodomain-like
PfamPF002497.4E-16121166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-25122174IPR009057Homeodomain-like
CDDcd001676.22E-13124165No hitNo description
PROSITE profilePS5129427.592168222IPR017930Myb domain
SMARTSM007178.2E-15172220IPR001005SANT/Myb domain
PfamPF002495.8E-15173215IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-21175221IPR009057Homeodomain-like
CDDcd001677.54E-12175215No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNRLSCHSST TPSSSSSSMG MVYPDMGCLS LPPNYGIVVC SSRENERASS GFRFMENSKT  60
RSFEENHSSD AVEGKGSDYS DGFGDNNMPI NLNSNLNEEN PNENAVSGKE TDSGQSKLCA  120
RGHWRPAEDT KLKELVALYG PQNWNLIAEK LEGRSGKSCR LRWFNQLDPR INRRAFTEEE  180
EERLMQAHRL YGNKWAMIAR LFPGRTDNAV KNHWHVIMAR KYREKSSAYR RRKLSQSVYR  240
KMEETPNIVC RDAVTKAEPP PYCLNMSDRR LGIISHYQFG IFNGGDAGGV NGGSNVSPHM  300
TSEREAILSS EASYRNGFCA QAQQPPFDFF PDLSNDMMGT FSQTRFWDRP IDEPQVRGYY  360
PQLQHQQLHP SHMMTMQQSE FLSSQSNTES TASITPQVSA IESSSSVAGS SNYSHYETIL  420
PPFIDFLGVG AT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-341212217107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219233RKYREKSSAYRRRKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527270.0KM052727.1 Gossypium hirsutum LOF-like transcription factor LOF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478704.10.0PREDICTED: myb protein-like isoform X2
SwissprotQ9SEZ48e-78MY105_ARATH; Transcription factor MYB105
TrEMBLA0A0D2RLC60.0A0A0D2RLC6_GOSRA; Uncharacterized protein
STRINGGorai.005G142000.10.0(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-77myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]