PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G142000.1
Common NameB456_005G142000, LOC105794202
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 445aa    MW: 49890.5 Da    PI: 8.0204
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G142000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.9e-11121178147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...........TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...........kgRtlkqcksrwqky 47 
                         rg W + Ed +l+++v+++G+ +W++Ia+++             +R  k+c++rw++ 
  Gorai.005G142000.1 121 RGHWRPAEDTKLKELVALYGPQNWNLIAEKLEgrsgkivaknsGKRKSKSCRLRWFNQ 178
                         899*****************************99999999999889999999999985 PP
2Myb_DNA-binding57.23.8e-18185228146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         r ++T+eE+e+l +a++++G++ W+ Iar ++ gRt++ +k++w+ 
  Gorai.005G142000.1 185 RRAFTEEEEERLMQAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 228
                         678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.038116171IPR017930Myb domain
SMARTSM007178.7E-11120181IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-24121226IPR009057Homeodomain-like
PfamPF002491.2E-10121178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-21122186IPR009057Homeodomain-like
CDDcd001671.03E-9124177No hitNo description
PROSITE profilePS5129427.592180234IPR017930Myb domain
SMARTSM007178.2E-15184232IPR001005SANT/Myb domain
PfamPF002496.0E-15185227IPR001005SANT/Myb domain
CDDcd001679.28E-12187227No hitNo description
Gene3DG3DSA:1.10.10.604.3E-21187233IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MNRLSCHSST TPSSSSSSMG MVYPDMGCLS LPPNYGIVVC SSRENERASS GFRFMENSKT  60
RSFEENHSSD AVEGKGSDYS DGFGDNNMPI NLNSNLNEEN PNENAVSGKE TDSGQSKLCA  120
RGHWRPAEDT KLKELVALYG PQNWNLIAEK LEGRSGKIVA KNSGKRKSKS CRLRWFNQLD  180
PRINRRAFTE EEEERLMQAH RLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREKSSA  240
YRRRKLSQSV YRKMEETPNI VCRDAVTKAE PPPYCLNMSD RRLGIISHYQ FGIFNGGDAG  300
GVNGGSNVSP HMTSEREAIL SSEASYRNGF CAQAQQPPFD FFPDLSNDMM GTFSQTRFWD  360
RPIDEPQVRG YYPQLQHQQL HPSHMMTMQQ SEFLSSQSNT ESTASITPQV SAIESSSSVA  420
GSSNYSHYET ILPPFIDFLG VGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-301212337107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231245RKYREKSSAYRRRKL
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in organ boundaries. {ECO:0000269|PubMed:19542355}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527270.0KM052727.1 Gossypium hirsutum LOF-like transcription factor LOF3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478703.10.0PREDICTED: myb protein-like isoform X1
SwissprotQ9SEZ43e-74MY105_ARATH; Transcription factor MYB105
TrEMBLA0A0D2NCK60.0A0A0D2NCK6_GOSRA; Uncharacterized protein
STRINGGorai.005G142000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12102896
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.15e-74myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]