PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

HD-ZIP

Protein Properties

Length: 288aa MW: 32690.6 Da PI: 6.2428

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G139600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.1	6.5e-18	80	133	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Gorai.005G139600.1 80 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 133 456899***********************************************9 PP
2	HD-ZIP_I/II	131.8	2.7e-42	79	171	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+y+a+k++n++L++++++L++e+ Gorai.005G139600.1 79 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQYEAIKADNDALQTQNQKLHAEI 169 69**************************************************************************************999 PP HD-ZIP_I/II 92 ke 93 ++ Gorai.005G139600.1 170 MA 171 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.71E-19	70	137	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.329	75	135	IPR001356	Homeobox domain
SMART	SM00389	1.8E-17	78	139	IPR001356	Homeobox domain
CDD	cd00086	5.49E-16	80	136	No hit	No description
Pfam	PF00046	2.9E-15	80	133	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.7E-19	82	142	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	106	115	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	110	133	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	115	131	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.1E-16	135	175	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009744	Biological Process	response to sucrose
GO:0048826	Biological Process	cotyledon morphogenesis
GO:0080022	Biological Process	primary root development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSCNGMAFFP ANFMLQSPHE EDHQPSTSIN QMLPSCPPQD FHGVASFLGK RSMSFSGIDV 60 CEEANGEDDL SDDGSQAGEK KRRLNMEQVK TLEKNFELGN KLEPERKMQL ARALGLQPRQ 120 IAIWFQNRRA RWKTKQLEKD YDLLKRQYEA IKADNDALQT QNQKLHAEIM ALKSREPTES 180 INLNKETEGS CSNRSENSSD VKLDISRTPA IDSPLSTHPT SRTFFPTSIR PTGGAAQLFQ 240 TSSSRPDHHH PCQKMDQMVK EESLSNMFCT IEDQTGFWPW LEQPHFN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	127	135	RRARWKTKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00225	DAP	Transfer from AT1G69780	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478668.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Refseq	XP_012478669.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-13
Swissprot	Q8LC03	1e-121	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A0D2SGM9	0.0	A0A0D2SGM9_GOSRA; Uncharacterized protein
STRING	Gorai.005G139600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2633	27	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-123	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G139600.1
Entrez Gene	105794177

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]