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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.005G138100.1 |
Common Name | B456_005G138100, LOC105794154 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
RAV |
Protein Properties |
Length: 347aa MW: 38372.6 Da PI: 9.687 |
Description |
RAV family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.005G138100.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 44.6 | 3.6e-14 | 58 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+ykGV + +grW A+I++ ++r++lg+f ++eAaka++ a+++++g
Gorai.005G138100.1 58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAAKAYDIAAQRFRG 106
89****9888.8*********3.....5**********99*************98 PP
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2 | B3 | 103.9 | 8.7e-33 | 189 | 290 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86
f+k+ tpsdv+k++rlv+pk++ae++ gg + +++ l led +g++W++k++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++
Gorai.005G138100.1 189 FEKAVTPSDVGKLNRLVIPKQHAEKYfplqsGGASSKGVLLNLEDVTGKVWRFKYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRST 279
89*****************************888899***************************************************886 PP
SSEE..EEEEE CS
B3 87 rsefelvvkvf 97
e++l++++
Gorai.005G138100.1 280 GAEKKLYIHWK 290
67777888775 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 347 aa
Download sequence Send
to blast |
MDGGCIAIDE STTSDSMSIS ISSLLPPVTK YPDSLCRVGS GTSVIVESKA ESKKLPSSKY 60 KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAAKAYDIA AQRFRGPDAV TNFKHLQETE 120 EDGIEMAFLN THSKAEIVDM LRKHTYNDEL EQSRTRRCYG FDGNGKRVVG NEAVFGSFGA 180 EVKARDQLFE KAVTPSDVGK LNRLVIPKQH AEKYFPLQSG GASSKGVLLN LEDVTGKVWR 240 FKYSYWNSSQ SYVLTKGWSR FVKEKNLKAG DIVSFQRSTG AEKKLYIHWK AKSGVENPVG 300 LRLFGVKIFG GAATGNLGCN NGKRTREIEL LALECSKKQR AIINAL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in all tissues examined: Roots, rosette leaves, cauline leaves, inflorescence stems, flowers and siliques. Highest expression in roots and rosette leaves. Very low expression in flowers. {ECO:0000269|PubMed:9862967}. |
Functional Description ? help
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Source |
Description |
UniProt | Binds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}. |
Function -- GeneRIF ? help
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- Expressions of the stress-related genes were altered in the GhRAV1 transgenic Arabidopsis plants under high salinity and drought stresses.
[PMID: 25710493]
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Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JQ618849 | 0.0 | JQ618849.1 UNVERIFIED: Gossypium hirsutum RAV1-like mRNA, complete sequence. |
Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] - Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
RAV genes: regulation of floral induction and beyond. Ann. Bot., 2014. 114(7): p. 1459-70 [PMID:24812253] - Li XJ, et al.
Overexpression of cotton RAV1 gene in Arabidopsis confers transgenic plants high salinity and drought sensitivity. PLoS ONE, 2015. 10(2): p. e0118056 [PMID:25710493] - Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering. Plant Sci., 2015. 241: p. 78-95 [PMID:26706061] - Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] - Zhao Y, et al.
ABA receptor PYL9 promotes drought resistance and leaf senescence. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54 [PMID:26831097]
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