PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.005G136000.2

Common Name

B456_005G136000, LOC105794130

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 185aa MW: 20693 Da PI: 10.1694

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G136000.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.6	8e-12	16	67	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ ++L +l+P+ ++k++++ s + L +A YIk+L+ Gorai.005G136000.2 16 RKAIEKKRRNDMKNLCSKLASLIPHhNFKPSKEIASQQDQLDLAAVYIKHLR 67 579********************999999999**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.417	11	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.3E-10	15	71	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.17E-5	16	71	No hit	No description
SuperFamily	SSF47459	1.44E-10	16	86	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-8	17	66	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.4E-5	17	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 185 aa Download sequence Send to blast
MKKNSCGGQS NSKPDRKAIE KKRRNDMKNL CSKLASLIPH HNFKPSKEIA SQQDQLDLAA 60 VYIKHLRERI EKLKRLKEEA MRSMEASSSM MERTASVGLT SPVLELRDLG SSIELVLITG 120 LNKNFMLYEV ISIFEQEGAE VVSASFSTVG GKIFHTLHAQ AKLSRVGVET TRVCQRLQEL 180 IKSY*

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF460032	0.0	KF460032.1 Gossypium hirsutum cultivar Sumian No.22 bHLH transcription factor (bHLH130) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012478588.1	1e-134	PREDICTED: uncharacterized protein LOC105794130
Refseq	XP_012478589.1	1e-134	PREDICTED: uncharacterized protein LOC105794130
Refseq	XP_012478590.1	1e-134	PREDICTED: uncharacterized protein LOC105794130
TrEMBL	A0A0D2REL3	1e-132	A0A0D2REL3_GOSRA; Uncharacterized protein
STRING	Gorai.005G136000.1	1e-133	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	6e-22	bHLH family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G136000.2
Entrez Gene	105794130

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]