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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.005G136000.1 | ||||||||
Common Name | B456_005G136000, LOC105794130 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 185aa MW: 20693 Da PI: 10.1694 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.6 | 8e-12 | 16 | 67 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +++E++RR+++++ ++L +l+P+ ++k++++ s + L +A YIk+L+ Gorai.005G136000.1 16 RKAIEKKRRNDMKNLCSKLASLIPHhNFKPSKEIASQQDQLDLAAVYIKHLR 67 579**********************999999999****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.417 | 11 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.3E-10 | 15 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.17E-5 | 16 | 71 | No hit | No description |
SuperFamily | SSF47459 | 1.44E-10 | 16 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-8 | 17 | 66 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-5 | 17 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MKKNSCGGQS NSKPDRKAIE KKRRNDMKNL CSKLASLIPH HNFKPSKEIA SQQDQLDLAA 60 VYIKHLRERI EKLKRLKEEA MRSMEASSSM MERTASVGLT SPVLELRDLG SSIELVLITG 120 LNKNFMLYEV ISIFEQEGAE VVSASFSTVG GKIFHTLHAQ AKLSRVGVET TRVCQRLQEL 180 IKSY* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF460032 | 0.0 | KF460032.1 Gossypium hirsutum cultivar Sumian No.22 bHLH transcription factor (bHLH130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012478588.1 | 1e-134 | PREDICTED: uncharacterized protein LOC105794130 | ||||
Refseq | XP_012478589.1 | 1e-134 | PREDICTED: uncharacterized protein LOC105794130 | ||||
Refseq | XP_012478590.1 | 1e-134 | PREDICTED: uncharacterized protein LOC105794130 | ||||
TrEMBL | A0A0D2REL3 | 1e-132 | A0A0D2REL3_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.005G136000.1 | 1e-133 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1278 | 25 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20970.1 | 6e-22 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Gorai.005G136000.1 |
Entrez Gene | 105794130 |
Publications ? help Back to Top | |||
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