PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G126700.1
Common NameB456_005G126700, LOC105794002
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family FAR1
Protein Properties Length: 247aa    MW: 28172.8 Da    PI: 7.6649
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G126700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.55.4e-2982169291
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                         fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a++ v+k ++gkw+vtk+++eH+H+lap
  Gorai.005G126700.1  82 FYNAYATRVGFIIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMILVRKVSSGKWVVTKFVKEHTHPLAP 169
                         ******************************************9988..9**************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-2682169IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MEFGVHGDVN GGMVLNSVQA EASSMENENE TGENPVEETF QKELNEKVEQ ISPGRDDIPE  60
GIPADEPYVG QEFESEAAAH AFYNAYATRV GFIIRVSKLS RSRRDGSAIG RALVCNKEGF  120
RMPDKREKIV RQRAETRVGC RAMILVRKVS SGKWVVTKFV KEHTHPLAPG KGRRDCIYDQ  180
YPNEHNKIRE LTQQLAIEKK RAATYKRHLE LIFEQIEEHN ESLSKKIQHI VDRVREIESK  240
EQQNRV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478406.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X2
RefseqXP_016693429.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 12-like isoform X1
TrEMBLA0A0D2SFJ50.0A0A0D2SFJ5_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JYQ10.0A0A1U8JYQ1_GOSHI; protein FAR1-RELATED SEQUENCE 12-like isoform X1
STRINGGorai.005G126700.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73022539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.21e-101FAR1 family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]