PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.005G116500.1
Common NameB456_005G116500, LOC105793876
Organism
Gossypium raimondii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 179aa    MW: 19754.2 Da    PI: 5.0739
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.005G116500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.5e-191565155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        s y+GVr +k +g+Wv+eIr+p   gk++r++lg+f t+e+Aa a++ a+++++g
  Gorai.005G116500.1 15 SSYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFETPEMAASAYDVAALQFRG 65
                        67*****999.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.7E-131565IPR001471AP2/ERF domain
CDDcd000184.61E-331575No hitNo description
SuperFamilySSF541719.15E-231574IPR016177DNA-binding domain
PROSITE profilePS5103223.8151673IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-321674IPR001471AP2/ERF domain
SMARTSM003801.2E-371679IPR001471AP2/ERF domain
PRINTSPR003673.8E-101728IPR001471AP2/ERF domain
PRINTSPR003673.8E-103955IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEGKNSSSAR AGLPSSYRGV RKRKWGKWVS EIREPGKKTR IWLGSFETPE MAASAYDVAA  60
LQFRGGEARL NFPDLVSCLP KPASSNAEDI RKAAHEAASW VRTNAVVPDT GGSSSSTGPV  120
TVRLSQSQIQ AINESPMDSP KMWMQMSEAL MMDEAMMFCN ENKENEWEDM QVDSLWDT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-171777667ATERF1
3gcc_A3e-171777667ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012478205.11e-130PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-59ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A0D2SET91e-128A0A0D2SET9_GOSRA; Uncharacterized protein
STRINGGorai.005G116500.11e-129(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.16e-58ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]