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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.005G100600.1 |
Common Name | B456_005G100600, LOC105797306 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
MIKC_MADS |
Protein Properties |
Length: 312aa MW: 35178.5 Da PI: 5.3064 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.005G100600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 88.7 | 3.1e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+l +s
Gorai.005G100600.1 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58
79********************************************9887 PP
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2 | K-box | 29 | 4.6e-11 | 107 | 172 | 4 | 72 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnel 72
+s + ++++ e+lqqe+ k k++i +qr +R + Ge++++Ls e + eq Le+ l+++R +K+ l
Gorai.005G100600.1 107 ASPE-STDSQLEELQQEIVKCKSRIADIQRRLRIFEGEEITTLSQAEFH--EQILEETLQQVRLRKQGL 172
3333.68999*************************************98..9**************866 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRLSLFSRN 60 KSIEEILERY VNLPEHERGR LRNEEFLLKA LGKLRDEADQ IQTYQAASPE STDSQLEELQ 120 QEIVKCKSRI ADIQRRLRIF EGEEITTLSQ AEFHEQILEE TLQQVRLRKQ GLQEKATSSS 180 SALDWIRKKD PQVHSLNFLE SNGLLPQRDE CQSVAENILP PLDGEEIINV GDQLSPTRSG 240 LDNSNNMQRT ELGQVNNVNL SPWTELYSTV AGNDSFPDGQ PAAGGGGRAL LELYVSQFTQ 300 SAISTMNQHH T*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX583642 | 3e-74 | JX583642.1 Gossypium hirsutum clone NBRI_GE16735 microsatellite sequence. |