 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Gorai.005G098200.2 |
| Common Name | B456_005G098200 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 255aa MW: 28659.4 Da PI: 7.1554 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Gorai.005G098200.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 52.1 | 1.1e-16 | 112 | 164 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++t+eq +Le+ F++++++s + + LA++l+L rqV vWFqNrRa+ k
Gorai.005G098200.2 112 RKKLRLTREQSSILEDKFKQHSTLSPK--QALAEELNLRPRQVEVWFQNRRARTK 164
78889********************97..68**********************98 PP
|
| 2 | HD-ZIP_I/II | 111 | 7.8e-36 | 112 | 198 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
+kk+rl++eq+++LE++F+++++L+p+ ++la+eL+l+prqv+vWFqnrRARtk+kq+E+++e Lk++y++l+een+rL+keveeL+ +
Gorai.005G098200.2 112 RKKLRLTREQSSILEDKFKQHSTLSPK--QALAEELNLRPRQVEVWFQNRRARTKLKQTEVNCELLKKCYETLTEENKRLQKEVEELK-S 198
69***********************95..69********************************************************9.4 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 255 aa
Download sequence Send
to blast |
MGFDDICNTA LGLGLGCLVK QENISQLDHH QQKKKQLFLK HDHFSPSLLS LAPSYDTCAI 60
FDAHQQQASS LSAASSFSNS SVKRERDLGG EEVELERICS RVSDEDDEGS PRKKLRLTRE 120
QSSILEDKFK QHSTLSPKQA LAEELNLRPR QVEVWFQNRR ARTKLKQTEV NCELLKKCYE 180
TLTEENKRLQ KEVEELKSLK VTAPCYMQVG AATLTMCPSC ERVDNVGENP STTLFTLGQK 240
SHFITPFTHP SAAC*
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 158 | 166 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ526924 | 0.0 | HQ526924.1 Gossypium herbaceum clone NBRI_B2_832 simple sequence repeat marker, mRNA sequence. |
| Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
Nature, 2012. 492(7429): p. 423-7
[PMID:23257886] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
Elife, 2017.
[PMID:27697148] - Song L, et al.
A transcription factor hierarchy defines an environmental stress response network.
Science, 2017.
[PMID:27811239]
|
