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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Gorai.005G088800.1 |
Common Name | B456_005G088800, LOC105797160 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 299aa MW: 33899.4 Da PI: 7.0063 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Gorai.005G088800.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 167.7 | 4e-52 | 10 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lp+GfrFhPtdeelv++yL++k++++++ + +i+e+d+yk++PwdLp + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk+
Gorai.005G088800.1 10 LPAGFRFHPTDEELVMHYLCRKCASQSIAV-PIIAELDLYKYDPWDLPDLALYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKP 99
799************************999.88***************65556799*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + + vg+kk Lvfy+g+apkgekt+W+mheyrl
Gorai.005G088800.1 100 IGQ--PKPVGIKKALVFYSGKAPKGEKTNWIMHEYRL 134
*98..789***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MTATELQLRL PAGFRFHPTD EELVMHYLCR KCASQSIAVP IIAELDLYKY DPWDLPDLAL 60 YGEKEWYFFS PRDRKYPNGS RPNRAAGSGY WKATGADKPI GQPKPVGIKK ALVFYSGKAP 120 KGEKTNWIMH EYRLADVDRS VRKKNSLRLD DWVLCRIYNK KGCIEKQPPR GSVTKKASVT 180 EIEESKPDNG TLGVEACEFP PAVTAVGNDY VYFDSSESVP RVHTDSSCSE HAVSREFMTE 240 VQSVPKWKEE LGMANNNALD FAYNYLDTNM DIGFASQMQT SNQLSPYQDI FMYLQKPF*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU706341 | 0.0 | EU706341.1 Gossypium hirsutum NAC domain protein NAC3 (NAC1) mRNA, complete cds. |
Publications
? help Back to Top |
- Paterson AH, et al.
Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] - Florentin A,Damri M,Grafi G
Stress induces plant somatic cells to acquire some features of stem cells accompanied by selective chromatin reorganization. Dev. Dyn., 2013. 242(10): p. 1121-33 [PMID:23798027] - Jensen MK, et al.
ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana. FEBS Open Bio, 2013. 3: p. 321-7 [PMID:23951554] - Wang YX
Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress. Mol. Biol. Rep., 2013. 40(11): p. 6451-8 [PMID:24057250] - Yang X, et al.
Overexpression of a Miscanthus lutarioriparius NAC gene MlNAC5 confers enhanced drought and cold tolerance in Arabidopsis. Plant Cell Rep., 2015. 34(6): p. 943-58 [PMID:25666276] - Du Q,Wang H
The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation. Plant Signal Behav, 2015. 10(10): p. e1078955 [PMID:26340415] - Takasaki H, et al.
SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] - Liu Y,Sun J,Wu Y
Arabidopsis ATAF1 enhances the tolerance to salt stress and ABA in transgenic rice. J. Plant Res., 2016. 129(5): p. 955-962 [PMID:27216423] - Ghandchi FP,Caetano-Anolles G,Clough SJ,Ort DR
Investigating the Control of Chlorophyll Degradation by Genomic Correlation Mining. PLoS ONE, 2016. 11(9): p. e0162327 [PMID:27618630] - Zhao J,Missihoun TD,Bartels D
The ATAF1 transcription factor is a key regulator of aldehyde dehydrogenase 7B4 (ALDH7B4) gene expression in Arabidopsis thaliana. Planta, 2018. 248(4): p. 1017-1027 [PMID:30027414]
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