PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

MIKC_MADS

Protein Properties

Length: 263aa MW: 30620.4 Da PI: 9.4959

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G087600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.2	2.4e-29	59	109	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvt+skRrngi+KKA+E+ vLCda+v++iif+s+gk++ey+s Gorai.005G087600.1 59 KRIENSSNRQVTYSKRRNGIMKKAKEITVLCDAKVSLIIFASSGKMHEYCS 109 79***********************************************96 PP
2	K-box	87.4	2.9e-29	121	217	1	97
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 yqk+sgk+l++ak+e+l++e++++kke++++q e+Rhl+Ged++sL +keL+ Le++Le++l+ +R+k++++l + ++++ e+++++ n Gorai.005G087600.1 121 YQKTSGKKLWDAKHENLSNEIDRIKKENDSMQIELRHLKGEDITSLPYKELMALEDALENGLTCVRAKQMDVLDMAKKNTKFLEEDNKQLN 211 899***************************************************************************************9 PP K-box 92 kaLrkk 97 +++ Gorai.005G087600.1 212 FIVNQQ 217 988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	9.4E-41	51	110	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	32.534	51	111	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.24E-36	52	146	IPR002100	Transcription factor, MADS-box
CDD	cd00265	1.13E-41	52	130	No hit	No description
PRINTS	PR00404	1.5E-28	53	73	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	53	107	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.1E-23	60	107	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-28	73	88	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.5E-28	88	109	IPR002100	Transcription factor, MADS-box
Pfam	PF01486	3.7E-19	132	211	IPR002487	Transcription factor, K-box
PROSITE profile	PS51297	14.242	134	220	IPR002487	Transcription factor, K-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010093	Biological Process	specification of floral organ identity
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MQISKPEIEC LKLLVFLSWL LSLNLILCSI PHHFTTKKHQ SKEVEREKSK MGRGKIEIKR 60 IENSSNRQVT YSKRRNGIMK KAKEITVLCD AKVSLIIFAS SGKMHEYCSP STKLIDILDQ 120 YQKTSGKKLW DAKHENLSNE IDRIKKENDS MQIELRHLKG EDITSLPYKE LMALEDALEN 180 GLTCVRAKQM DVLDMAKKNT KFLEEDNKQL NFIVNQQQLT YENVREHMDH HGYHRAARAD 240 FNSQMPFAFR VQPMQPNLQE RM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	4e-17	51	141	1	83	MEF2 CHIMERA
6bz1_B	4e-17	51	141	1	83	MEF2 CHIMERA
6bz1_C	4e-17	51	141	1	83	MEF2 CHIMERA
6bz1_D	4e-17	51	141	1	83	MEF2 CHIMERA
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269\|PubMed:17920788, ECO:0000269\|Ref.1}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269\|PubMed:23181568, ECO:0000269\|Ref.1, ECO:0000305\|PubMed:17920788}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00080	ChIP-seq	Transfer from AT5G20240	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ409869	0.0	FJ409869.1 Gossypium hirsutum MADS-12 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482533.1	1e-159	PREDICTED: floral homeotic protein PMADS 2-like
Refseq	XP_016693674.1	1e-159	PREDICTED: floral homeotic protein PMADS 2-like
Refseq	XP_017648636.1	1e-159	PREDICTED: floral homeotic protein PMADS 2-like
Swissprot	Q0HA25	1e-115	MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBL	A0A0D2N9L7	0.0	A0A0D2N9L7_GOSRA; Uncharacterized protein
STRING	Gorai.005G087600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5300	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	5e-90	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	Gorai.005G087600.1

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]