PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

GRAS

Protein Properties

Length: 572aa MW: 63524.2 Da PI: 5.1366

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.005G083700.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	442.3	3.3e-135	203	570	3	373
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + L+ecA +s+g+ e+a+a++++l++ +s +gdp qR+aay++e+Laar+a s++ lykal+++e + ss++laa+++++ev+P++kf Gorai.005G083700.3 203 QMLIECAAILSEGHIEKASAIINELRQKVSIQGDPPQRIAAYMVEGLAARMAASGKCLYKALRCKEPP---SSDRLAAMQILFEVCPCFKF 290 79***************************************************************9...9*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 ++++aN aI ea++ge+rvHiiDfdisqG Q+++L+q++a+ p++pp+lR+Tgv++pes+ + le +g rL+k+Ae lgvpfef++ v Gorai.005G083700.3 291 GFMAANGAIIEAFKGEKRVHIIDFDISQGSQYITLIQTIAKLPGKPPHLRLTGVDDPESVqrLNGGLEIVGLRLEKLAEILGVPFEFRA-V 380 ******************************************************99777889*******************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 +r++ + +++L++kpgEal+Vn+++ lh+++desvs+ ++rd++L++vks++Pk+v+vveq++++n+++F+ rf+ea +yysa+fdsl+a Gorai.005G083700.3 381 PSRTSLVAPSMLDCKPGEALIVNFAFLLHHMPDESVSTINQRDQLLRMVKSMNPKLVTVVEQDVNTNTSPFFPRFIEAYSYYSAVFDSLDA 471 *************************************************************************************** PP GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364 +lpres++r++vEr++l+r+ivn++aceg+er+er e ++kWr+r+ +aGFk+ p+s+++ ++++ l++++ ++ y+++e+ g+l +gW+d Gorai.005G083700.3 472 TLPRESQDRMNVERQCLARDIVNIIACEGEERIERYEVAGKWRARMIMAGFKSCPMSSNVIDTIQKLIKEYCDR-YKLKEDVGALHFGWED 561 ********************************************************************66.************ PP GRAS 365 rpLvsvSaW 373 ++L+++SaW Gorai.005G083700.3 562 KSLIVASAW 570 ******* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	65.423	175	552	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-132	203	570	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MHQQPFYNST VQRVGTMSLV RSAEPATASC RNTNLYSIQD SSDSTGMAIR MFGSDKHKPV 60 YVMDSYSSES YEKYFLDSPT DELIHSSSSG ISGSSVRLQD VSSCQIRDYL EIQSPDTLDS 120 DSDKMKLKLK ELERALLADN DVDGDDDMFG TGLSMEVDGE WSDPIRMGSH HDSPKESSSS 180 GTYLDSVSGN KEVSHVSSQT PKQMLIECAA ILSEGHIEKA SAIINELRQK VSIQGDPPQR 240 IAAYMVEGLA ARMAASGKCL YKALRCKEPP SSDRLAAMQI LFEVCPCFKF GFMAANGAII 300 EAFKGEKRVH IIDFDISQGS QYITLIQTIA KLPGKPPHLR LTGVDDPESV QRLNGGLEIV 360 GLRLEKLAEI LGVPFEFRAV PSRTSLVAPS MLDCKPGEAL IVNFAFLLHH MPDESVSTIN 420 QRDQLLRMVK SMNPKLVTVV EQDVNTNTSP FFPRFIEAYS YYSAVFDSLD ATLPRESQDR 480 MNVERQCLAR DIVNIIACEG EERIERYEVA GKWRARMIMA GFKSCPMSSN VIDTIQKLIK 540 EYCDRYKLKE DVGALHFGWE DKSLIVASAW S*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MHQQPFYNST VQRVGTMSLV RSAEPATASC RNTNLYSIQD SSDSTGMAIR MFGSDKHKPV  60
YVMDSYSSES YEKYFLDSPT DELIHSSSSG ISGSSVRLQD VSSCQIRDYL EIQSPDTLDS  120
DSDKMKLKLK ELERALLADN DVDGDDDMFG TGLSMEVDGE WSDPIRMGSH HDSPKESSSS  180
GTYLDSVSGN KEVSHVSSQT PKQMLIECAA ILSEGHIEKA SAIINELRQK VSIQGDPPQR  240
IAAYMVEGLA ARMAASGKCL YKALRCKEPP SSDRLAAMQI LFEVCPCFKF GFMAANGAII  300
EAFKGEKRVH IIDFDISQGS QYITLIQTIA KLPGKPPHLR LTGVDDPESV QRLNGGLEIV  360
GLRLEKLAEI LGVPFEFRAV PSRTSLVAPS MLDCKPGEAL IVNFAFLLHH MPDESVSTIN  420
QRDQLLRMVK SMNPKLVTVV EQDVNTNTSP FFPRFIEAYS YYSAVFDSLD ATLPRESQDR  480
MNVERQCLAR DIVNIIACEG EERIERYEVA GKWRARMIMA GFKSCPMSSN VIDTIQKLIK  540
EYCDRYKLKE DVGALHFGWE DKSLIVASAW S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-66	207	571	24	378	Protein SCARECROW
5b3h_D	3e-66	207	571	24	378	Protein SCARECROW
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012482485.1	0.0	PREDICTED: scarecrow-like protein 1 isoform X1
Swissprot	Q9SDQ3	0.0	SCL1_ARATH; Scarecrow-like protein 1
TrEMBL	A0A0D2N9G3	0.0	A0A0D2N9G3_GOSRA; Uncharacterized protein
STRING	Gorai.005G083700.1	0.0	(Gossypium raimondii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21450.1	0.0	SCARECROW-like 1

Link Out ? help Back to Top
Phytozome	Gorai.005G083700.3
Entrez Gene	105797101

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]